PROJECT INFORMATION
GOLD Project ID
Gp0137325  
Project Name
Freshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Freshwater metagenome from Crystal Geyser
NCBI BioProject Accession PRJNA229517
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02419150
Source Sample ID
PI Unknown
Added By JGI automated process on 2016-04-08
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center University of California, Berkeley (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Metagenome from CO2-driven Crystal Geyser near Green River, Utah, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Environmental microbiology: 19(2):459-474 Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO concentrations.
PubMed: 27112493 DOI: 10.1111/1462-2920.13362
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX667892  (Link to NCBI )
Experiment Title Crystal Geyser Metagenome CG2 sample 3.0 micron filter
SRA Submission ID 936266
Submitter Brian C. Thomas ([email protected])
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection size fractionation
Library Name CG2_3.0
Library Layout PAIRED
Library Instrument Illumina HiSeq 2000
Spot Length 200
PROJECT COMPOSITION
Study Freshwater microbial communities from Crystal Geyser, Utah, USA
Biosample Freshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0
Analysis Projects Freshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Freshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 449393
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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