PROJECT INFORMATION
GOLD Project ID
Gp0136508  
Project Name
Aeribacillus sp. S44D013  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Bacteria isolated from carboxylate platform fermentations inoculated with microbial communities from extreme environments.
NCBI BioProject Accession PRJNA311332
NCBI Locus Tag
  
NCBI BioSample Accession SAMN04549622
Source Sample ID
PI Emma Britain Caraway
Added By Emma Britain Caraway on 2016-03-18
Last Modified By Supratim Mukherjee on 2017-03-13
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center Texas A and M University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
In an effort to identify microbial communities with superior performances in the carboxylate platform for biofuel and high value chemical production, we screened 501 microbial communities from 77 sites across the continental U.S., Hawaii and Puerto Rico as inocula. From the best performing communities, we collected >1800 individual isolates by culturing with a variety of media and oxygen conditions. We generated draft genome sequence for 64 of the isolates, selected based on phylogenetic, ecological, and phenotypic variation. These sequences will be used to advance a system to study 1) the role of diversity in functional types within carboxylate platform fermentation communities, 2) the genetic basis for superior performance in these fermentations and 3) the basis of adaptation to extreme conditions.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Applied microbiology and biotechnology: 88(1):389-99 Structure and dynamics of the microbial communities underlying the carboxylate platform for biofuel production.
PubMed: 20676626 DOI: 10.1007/s00253-010-2789-7
PloS one: 7(6):e39689 Mesophilic and thermophilic conditions select for unique but highly parallel microbial communities to perform carboxylate platform biomass conversion.
PubMed: 22761870 DOI: 10.1371/journal.pone.0039689
Show more publications...

J. Appl. Microbiol.: 110(2):587-96 Microbial community composition and dynamics in a semi-industrial-scale facility operating under the MixAlco™ bioconversion platform.
PubMed: 21199196 DOI: 10.1111/j.1365-2672.2010.04919.x
Bioresour. Technol.: Comparison of mixed-acid fermentations inoculated with six different mixed cultures.
PubMed: 22705541 DOI: 10.1016/j.biortech.2012.05.043
SRA Experiment
 
SRA Experiment Id SRX1619467  (Link to NCBI )
Experiment Title Illumina MiSeq Reads of Environmental-Sourced Isolate from a Carboxylate Biofuel Platform: Sample S44D013
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name S44D013
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
Spot Length 600
PROJECT COMPOSITION
Study Bacteria isolated from carboxylate platform fermentations inoculated with microbial communities from extreme environments
Organism Aeribacillus sp. S44D013
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
563961  
Read Size
  
Vector
  
GC Percent
39  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0125997
Organism Name
Aeribacillus sp. S44D013  
Other names (alias, synonyms, short names, common names)
S44D013, OTU40, FHYS5  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Aeribacillus  
Genus Synonyms
  
Species
Aeribacillus sp. S44D013  
Subspecies
  
Species Synonyms
  
Strain
S44D013  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1466889
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Bacillaceae  
NCBI Genus
Aeribacillus  
NCBI Species
Aeribacillus sp. S44D013  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?