PROJECT INFORMATION
GOLD Project ID
Gp0134131  
Project Name
Roseivirga seohaensis SW-152  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Chun Shiong Chong
Added By Chun Shiong Chong on 2016-02-28
Last Modified By Supratim Mukherjee on 2016-03-11
Project Comments
Right now, Roseivirga seohaensis SW-152 is a synonym of Roseivirga ehrenbergii KMM 6017. However, the comparative analysis shows that the organisms are likely to be different species.  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of Malaya (Malaysia)
Collaborating Institute
  
Funding Agency
  
Project Description
The genome was sequenced by using Illumina Miseq and was assembled via CLC Bio  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Roseivirga seohaensis SW-152
Organism Roseivirga seohaensis SW-152
Analysis Projects Roseivirga seohaensis SW-152
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0125828
Organism Name
Roseivirga seohaensis SW-152  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Roseivirga  
Genus Synonyms
  
Species
Roseivirga seohaensis  
Subspecies
  
Species Synonyms
  
Strain
SW-152  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
10.1601/ex.9806  
Exemplar Name
Roseivirga seohaensis seohaensis  
Taxon DOI
10.1601/tx.29499  
Biosafety Level
  
Organism Comments
Right now, it is a synonym of Roseivirga ehrenbergii KMM 6017. However, the comparative analysis shows that the organisms are likely to be different species.  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 279360
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Roseivirgaceae  
NCBI Genus
Roseivirga  
NCBI Species
Roseivirga ehrenbergii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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