PROJECT INFORMATION
GOLD Project ID
Gp0131284  
Project Name
Lactobacillus reuteri DSM 20016  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genomic characterization of the genus Lactobacillus
NCBI BioProject ID 222257
NCBI BioProject Accession PRJNA222257
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02369412
PI
Added By JGI automated process on 2016-02-03
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Shanghai Majorbio Bio-pharm Technology Co.
Collaborating Institute
  
Funding Agency
  
Project Description
Genomic characterization of the genus Lactobacillus  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Nature communications Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX456270  (Link to NCBI )
Experiment Title Whole Genome Sequencing of Lactobacillus reuteri DSM 20016
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name DSM_20016
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
PROJECT COMPOSITION
Study Expanding the biotechnology potential of lactobacilli through comparative genomics - Inner Mongolia Agricultural University
Organism Limosilactobacillus reuteri DSM 20016
Analysis Projects Lactobacillus reuteri DSM 20016
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0123293
Organism Name
Limosilactobacillus reuteri DSM 20016  
Other names (alias, synonyms, short names, common names)
Lactobacillus reuteri DSM 20016 (basonym)  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Limosilactobacillus  
Genus Synonyms
  
Species
Limosilactobacillus reuteri  
Subspecies
  
Species Synonyms
  
Strain
DSM 20016  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 20016  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5423  
Exemplar Name
Lactobacillus reuteri  
Taxon DOI
10.1601/tx.5423  
Biosafety Level
  
Organism Comments
The name has been updated per publication PMID: 32293557  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 557436
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Limosilactobacillus  
NCBI Species
Limosilactobacillus reuteri  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human feces
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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