Studies
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49,618 |
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Biosamples
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133,254 |
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Sequencing Projects
|
410,769 |
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Analysis Projects
|
321,252 |
| Organisms | 410,918 |
| PROJECT INFORMATION | |||||||||||||||||||||
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GOLD Project ID
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Gp0130187
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Project Name
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Lactobacillus sakei DSM 20017
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Genomic characterization of the genus Lactobacillus | ||||||||||||||||||||
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NCBI BioProject ID
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222257 |
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NCBI BioProject Accession
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PRJNA222257 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN02369509 |
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| PI | |||||||||||||||||||||
| Added By |
JGI automated process
on 2016-02-03 |
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| Last Modified By |
Supratim Mukherjee
on 2021-03-25 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Agricultural |
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Sequencing Center
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Shanghai Majorbio Bio-pharm Technology Co.
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Collaborating Institute
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Funding Agency
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Project Description
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Genomic characterization of the genus Lactobacillus
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||
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Project Information
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Database
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Genome Publications
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Nature communications
Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.
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Other Publications
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International journal of systematic bacteriology
46(4):1158-63
Lactobacillus curvatus subsp. curvatus subsp. nov. and Lactobacillus curvatus subsp. melibiosus subsp. nov. and Lactobacillus sake subsp. sake subsp. nov. and Lactobacillus sake subsp. carnosus subsp. nov., new subspecies of Lactobacillus curvatus Abo-Elnaga and Kandler 1965 and Lactobacillus sake Katagiri, Kitahara, and Fukami 1934 (Klein et al. 1996, emended descriptions), respectively.
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Expanding the biotechnology potential of lactobacilli through comparative genomics - Inner Mongolia Agricultural University |
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| Organism |
Lactobacillus sakei DSM 20017 |
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| Analysis Projects |
Lactobacillus sakei DSM 20017 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina MiSeq Illumina HiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0032757 |
| Organism Name |
Lactobacillus sakei DSM 20017
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| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
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| Phylogeny |
FIRMICUTES
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| Genus |
Lactobacillus
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| Genus Synonyms |
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| Species |
Lactobacillus sakei
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| Subspecies |
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| Species Synonyms |
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| Strain |
DSM 20017
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 20017
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.5428
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| Exemplar Name |
Lactobacillus sakei sakei
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| Taxon DOI |
10.1601/tx.5428
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| Biosafety Level |
1
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
|
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| NCBI Taxonomy ID |
1423833 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Firmicutes
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| NCBI Class |
Bacilli
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| NCBI Order |
Lactobacillales
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| NCBI Family |
Lactobacillaceae
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| NCBI Genus |
Latilactobacillus
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| NCBI Species |
Latilactobacillus sakei
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
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| Ecosystem Category |
Food production
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| Ecosystem Type |
Fermented beverages
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
Rod-shaped
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| Motility |
Nonmotile
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
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| Cell Diameter |
0.6-0.8 µm
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| Cell Length |
2-3 µm
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
Singles Chains |
| Diseases |
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| Known Habitats |
Fermented food product |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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