Studies
|
52,459 |
|
Biosamples
|
170,240 |
|
Sequencing Projects
|
472,597 |
|
Analysis Projects
|
359,686 |
| Organisms | 460,462 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0128396
|
|
Project Name
|
Silvanigrella aquatica MWH-Nonnen-W8red
|
|
Other Names
|
Silvanigrella aquatica MWH-Nonnen-W8red
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Proteobacterium sp. Nonnen-W8red genome sequencing and assembly |
|
NCBI BioProject Accession
|
PRJNA310399 |
|
NCBI Locus Tag
|
|
|
NCBI BioSample Accession
|
SAMN04451922 |
| PI | Martin Hahn |
| Added By |
Martin Hahn
on 2016-02-02 |
| Last Modified By |
Martin Hahn
on 2017-09-06 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
|
|
Sequencing Center
|
University of Innsbruck
(Austria)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
Austrian Science Fund (FWF)
(Austria)
|
|
Project Description
|
FWF I482-B09
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
International Journal of Systematic and Evolutionary Microbiology
67(8):2555-2568
Silvanigrella aquatica gen. nov., sp. nov., isolated from a freshwater lake, description of Silvanigrellaceae fam. nov. and Silvanigrellales ord. nov., reclassification of the order Bdellovibrionales in the class Oligoflexia, reclassification of the families Bacteriovoracaceae and Halobacteriovoraceae in the new order Bacteriovoracales ord. nov., and reclassification of the family Pseudobacteriovoracaceae in the order Oligoflexales.
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Silvanigrella aquatica MWH-Nonnen-W8red |
| Organism |
Silvanigrella aquatica MWH-Nonnen-W8red |
| Analysis Projects |
Silvanigrella aquatica MWH-Nonnen-W8red |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina MiSeq |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0120501 |
| Organism Name |
Silvanigrella aquatica MWH-Nonnen-W8red
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA
|
| Genus |
|
| Genus Synonyms |
|
| Species |
Silvanigrella aquatica
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
MWH-Nonnen-W8red
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
10.1601/ex.30508
|
| Exemplar Name |
Silvanigrella aquatica
|
| Taxon DOI |
10.1601/tx.30508
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1915309 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Oligoflexia
|
| NCBI Order |
Silvanigrellales
|
| NCBI Family |
Silvanigrellaceae
|
| NCBI Genus |
Silvanigrella
|
| NCBI Species |
Silvanigrella aquatica
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Freshwater
|
| Ecosystem Subtype |
Lake
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
|
| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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