PROJECT INFORMATION
GOLD Project ID
Gp0128373  
Project Name
Pseudomonas extremaustralis USBA 515  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudomonas extremaustralis USBA 515
NCBI BioProject ID 330486
NCBI BioProject Accession PRJNA330486
NCBI Locus Tag
BCL77  
NCBI BioSample Accession SAMN05421862
PI Eddy Rubin
Added By JGI automated process on 2016-01-29
Last Modified By JGI automated process on 2019-09-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Comparative analysis of bacterial genome sequences from microorganisms inhabiting terrestrial saline springs in Colombian Andes Mountain Range  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences Draft genome sequence of strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2510118  (Link to NCBI )
Experiment Title Pseudomonas extremaustralis USBA 515
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AWUYN
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Comparative analysis of microorganisms from saline springs in Andes Mountain Range, Colombia
Organism Pseudomonas extremaustralis USBA 515
Analysis Projects Pseudomonas extremaustralis USBA 515
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0120490
Organism Name
Pseudomonas extremaustralis USBA 515  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas extremaustralis  
Subspecies
  
Species Synonyms
  
Strain
USBA 515  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CMPUJ U 515  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 359110
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas extremaustralis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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