PROJECT INFORMATION
GOLD Project ID
Gp0128255  
Project Name
Dethiosulfovibrio salsuginis USBA 82  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Dethiosulfovibrio salsuginis USBA 82
NCBI BioProject ID 330472
NCBI BioProject Accession PRJNA330472
NCBI Locus Tag
BCL63  
NCBI BioSample Accession SAMN06275492
PI Eddy Rubin
Added By JGI automated process on 2016-01-29
Last Modified By Hema Katta on 2019-01-09
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Comparative analysis of bacterial genome sequences from microorganisms inhabiting terrestrial saline springs in Colombian Andes Mountain Range  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences Draft genome sequence of DSM 21565 an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2753926  (Link to NCBI )
Experiment Title Dethiosulfovibrio salsuginis USBA 82
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AXAAU
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Comparative analysis of microorganisms from saline springs in Andes Mountain Range, Colombia
Organism Dethiosulfovibrio salsuginis USBA 82
Analysis Projects Dethiosulfovibrio salsuginis USBA 82
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0028848
Organism Name
Dethiosulfovibrio salsuginis USBA 82  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SYNERGISTETES  
Genus
Dethiosulfovibrio  
Genus Synonyms
  
Species
Dethiosulfovibrio salsuginis  
Subspecies
  
Species Synonyms
  
Strain
USBA 82  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.17912  
Exemplar Name
Dethiosulfovibrio salsuginis  
Taxon DOI
10.1601/tx.17912  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 561720
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Synergistetes  
NCBI Class
Synergistia  
NCBI Order
Synergistales  
NCBI Family
Synergistaceae  
NCBI Genus
Dethiosulfovibrio  
NCBI Species
Dethiosulfovibrio salsuginis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Non-marine Saline and Alkaline  
Ecosystem Subtype
Saline  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?