PROJECT INFORMATION
GOLD Project ID
Gp0127290  
Project Name
Xenorhabdus poinarii DSM 4768  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Xenorhabdus poinarii DSM 4768
NCBI BioProject ID 332163
NCBI BioProject Accession PRJNA332163
NCBI Locus Tag
BDE34  
NCBI BioSample Accession SAMN05444961
PI Markus Göker
Added By JGI automated process on 2016-01-07
Last Modified By JGI automated process on 2019-04-28
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II: from individual species to whole genera  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3785638  (Link to NCBI )
Experiment Title Xenorhabdus poinarii DSM 4768
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name CHCAN
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3785637  (Link to NCBI )
Experiment Title Xenorhabdus poinarii DSM 4768
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name CHCAN
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3785639  (Link to NCBI )
Experiment Title Xenorhabdus poinarii DSM 4768
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name CHCAN
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera
Organism Xenorhabdus poinarii DSM 4768
Analysis Projects Xenorhabdus poinarii DSM 4768
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
PacBio RS II
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0029660
Organism Name
Xenorhabdus poinarii DSM 4768  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Xenorhabdus  
Genus Synonyms
  
Species
Xenorhabdus poinarii  
Subspecies
  
Species Synonyms
  
Strain
DSM 4768  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 4768  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3346  
Exemplar Name
Xenorhabdus poinarii  
Taxon DOI
10.1601/tx.3351  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 40577
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Morganellaceae  
NCBI Genus
Xenorhabdus  
NCBI Species
Xenorhabdus poinarii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Microbial  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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