PROJECT INFORMATION
GOLD Project ID
Gp0127212  
Project Name
Pseudomonas salegens CECT 8338  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudomonas salegens CECT 8338
NCBI BioProject ID 323043
NCBI BioProject Accession PRJNA323043
NCBI Locus Tag
A8893  
NCBI BioSample Accession SAMN05216210
PI Joyce Loper
Added By JGI automated process on 2016-01-07
Last Modified By JGI automated process on 2020-08-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Diversity of Pseudomonas spp.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2156430  (Link to NCBI )
Experiment Title Pseudomonas salegens CECT 8338
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AUTSA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2156429  (Link to NCBI )
Experiment Title Pseudomonas salegens CECT 8338
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AUTSA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2156428  (Link to NCBI )
Experiment Title Pseudomonas salegens CECT 8338
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AUTSA
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Genome sequencing of a diverse group of Pseudomonas species
Organism Pseudomonas salegens CECT 8338
Analysis Projects Pseudomonas salegens CECT 8338
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0120055
Organism Name
Pseudomonas salegens CECT 8338  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas salegens  
Subspecies
  
Species Synonyms
  
Strain
CECT 8338  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CECT 8338  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.25898  
Exemplar Name
Pseudomonas salegens  
Taxon DOI
10.1601/tx.25898  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1434072
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas salegens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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