PROJECT INFORMATION
GOLD Project ID
Gp0125872  
Project Name
Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703
NCBI BioProject Accession PRJNA365285
NCBI Locus Tag
BYF91  
NCBI BioSample Accession SAMN06266257
Source Sample ID
PI Holly Simon
Added By JGI automated process on 2015-12-17
Last Modified By JGI automated process on 2023-01-17
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing of microbial communities from the Columbia River estuary to analyze effect of nutrient fluxes  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000867
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX2753580  (Link to NCBI )
Experiment Title Columbia river estuary metaG S.703
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name AUSOA
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Estuarine microbial communities from the Columbia River estuary, to analyze effect of nutrient fluxes, a time series
Biosample Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703
Analysis Projects Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703
Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (v5.1 annotation)
Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (SPAdes)
Number of Analysis Projects (AP) 3
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Low Input Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 408172
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Estuary  

 

 

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