PROJECT INFORMATION
GOLD Project ID
Gp0124161  
Project Name
Acetobacterium bakii DSM 8239  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Acetobacterium bakii DSM 8239
NCBI BioProject Accession PRJNA290539
NCBI Locus Tag
AKG39  
NCBI BioSample Accession SAMN03892803
Source Sample ID
PI Unknown
Added By JGI automated process on 2015-11-06
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Korean Advanced Institute of Science and Technology
Collaborating Institute
  
Funding Agency
  
Project Description
Acetobacterium bakii is anaerobic, psychrophilic, and chemolithoautotrophic acetogen  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Genome announcements: Draft Genome Sequence of Acetobacterium bakii DSM 8239, a Potential Psychrophilic Chemical Producer through Syngas Fermentation.
PubMed: 26404601 DOI: 10.1128/genomeA.01070-15
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Acetobacterium bakii DSM 8239 genome sequencing
Organism Acetobacterium bakii DSM 8239
Analysis Projects Acetobacterium bakii DSM 8239
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0118601
Organism Name
Acetobacterium bakii DSM 8239  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Acetobacterium  
Genus Synonyms
  
Species
Acetobacterium bakii  
Subspecies
  
Species Synonyms
  
Strain
DSM 8239  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 8239  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4286  
Exemplar Name
Acetobacterium bakii  
Taxon DOI
10.1601/tx.4286  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 52689
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Eubacteriales  
NCBI Family
Eubacteriaceae  
NCBI Genus
Acetobacterium  
NCBI Species
Acetobacterium bakii  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Bioreactor  
Ecosystem Type
Anaerobic  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID X96960
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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