PROJECT INFORMATION
GOLD Project ID
Gp0123867  
Project Name
Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A2_L  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A2_L
NCBI BioProject ID 365455
NCBI BioProject Accession PRJNA365455
NCBI Locus Tag
BYH60  
NCBI BioSample Accession SAMN06266359
PI Michael Wagner
Added By JGI automated process on 2015-10-28
Last Modified By Tatiparthi Reddy on 2021-04-06
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Raman-based microcolony transcriptomics for studying microevolution and ecology of nitrifiers  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications "Science (New York, N.Y.)" 356(6333):82-85 Giant viruses with an expanded complement of translation system components.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX5780957  (Link to NCBI )
Experiment Title Klosterneuburg WWTP active sludge MT KNB_A2_L
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection other
Library Name ATTZY
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Active sludge and wastewater microbial communities from Klosterneuburg, Austria
Biosample Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A2_L
Analysis Projects Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A2_L (Metagenome Metatranscriptome)
Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A2_L (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Active sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_A2_L
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 942017
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Activated Sludge  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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