Studies
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56,336 |
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Biosamples
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196,965 |
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Sequencing Projects
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525,338 |
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Analysis Projects
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385,100 |
| Organisms | 484,220 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0122113
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Project Name
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Lactobacillus rhamnosus CNCM I-4036
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Lactobacillus rhamnosus CNCM I-4036 |
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NCBI BioProject Accession
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PRJNA268449 |
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NCBI Locus Tag
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QT14
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NCBI BioSample Accession
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SAMN03220255 |
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Source Sample ID
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| PI | Unknown |
| Added By | JGI automated process on 2015-10-15 |
| Last Modified By | |
| Project Comments |
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Project Status
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incomplete
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Project Relevance
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Medical |
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Sequencing Center
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Hero
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Collaborating Institute
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Funding Agency
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Project Description
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Lactobacillus rhamnosus CNCM I-4036 a probiotic isolated from the faeces of exclusively breast-fed infants active against Listeria monocytogenes and enteropathogens
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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The British journal of nutrition: Competitive inhibition of three novel bacteria isolated from faeces of breast milk-fed infants against selected enteropathogens. PubMed: 23360882 DOI: 10.1017/S0007114512005600 The British journal of nutrition: Isolation, identification and characterisation of three novel probiotic strains (Lactobacillus paracasei CNCM I-4034, Bifidobacterium breve CNCM I-4035 and Lactobacillus rhamnosus CNCM I-4036) from the faeces of exclusively breast-fed infants. PubMed: 23360881 DOI: 10.1017/S0007114512005211 Show more publications...
PloS one: 8(10):e78111 Safety and immunomodulatory effects of three probiotic strains isolated from the feces of breast-fed infants in healthy adults: SETOPROB study.
PubMed: 24205115 DOI: 10.1371/journal.pone.0078111 PloS one: 9(5):e98401 Effects of Lactobacillus paracasei CNCM I-4034, Bifidobacterium breve CNCM I-4035 and Lactobacillus rhamnosus CNCM I-4036 on hepatic steatosis in Zucker rats. PubMed: 24852284 DOI: 10.1371/journal.pone.0098401 |
| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Lactobacillus rhamnosus CNCM I-4036 genome sequencing |
| Organism |
Lactobacillus rhamnosus CNCM I-4036 |
| Analysis Projects |
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| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0117180 |
| Organism Name |
Lactobacillus rhamnosus CNCM I-4036
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
BACILLOTA
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| Genus |
Lactobacillus
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| Genus Synonyms |
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| Species |
Lactobacillus rhamnosus
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| Subspecies |
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| Species Synonyms |
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| Strain |
CNCM I-4036
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
47715 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Bacillota
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| NCBI Class |
Bacilli
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| NCBI Order |
Lactobacillales
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| NCBI Family |
Lactobacillaceae
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| NCBI Genus |
Lacticaseibacillus
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| NCBI Species |
Lacticaseibacillus rhamnosus
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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