PROJECT INFORMATION | |||||||||||||||||||||
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GOLD Project ID
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Gp0120538
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Project Name
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Cyclobacterium amurskyense KCTC 12363
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Cyclobacterium amurskyense strain:KCTC 12363 | ||||||||||||||||||||
NCBI BioProject Accession
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PRJNA289169 |
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NCBI Locus Tag
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CA2015
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NCBI BioSample Accession
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SAMN03846661 |
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Source Sample ID
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PI | Unknown | ||||||||||||||||||||
Added By | JGI automated process on 2015-09-09 | ||||||||||||||||||||
Last Modified By | Supratim Mukherjee on 2018-02-07 | ||||||||||||||||||||
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Environmental |
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Sequencing Center
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Korea Research Institute of Bioscience and Biotechnology
(South Korea)
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Collaborating Institute
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Funding Agency
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Project Description
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Genome sequencing of Cyclobacterium amurskyense KCTC 12363 using PacBio RS II sequencing platform
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Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||||
Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |||||||||||||||||||||
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||||
Study |
Cyclobacterium amurskyense strain:KCTC 12363 genome sequencing |
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Organism |
Cyclobacterium amurskyense KCTC 12363 |
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Analysis Projects |
Cyclobacterium amurskyense KCTC 12363 |
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Number of Analysis Projects (AP) |
1 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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PacBio Sequencing with P6-C4 chemistry
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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PacBio RS II |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0116137 |
Organism Name |
Cyclobacterium amurskyense KCTC 12363
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
BACTEROIDETES
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Genus |
Cyclobacterium
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Genus Synonyms |
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Species |
Cyclobacterium amurskyense
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Subspecies |
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Species Synonyms |
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Strain |
KCTC 12363
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
KCTC 12363
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Type Strain |
Yes
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Exemplar DOI |
10.1601/ex.9755
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Exemplar Name |
Cyclobacterium amurskyense
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Taxon DOI |
10.1601/tx.9755
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
320787 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Bacteroidota
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NCBI Class |
Cytophagia
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NCBI Order |
Cytophagales
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NCBI Family |
Cyclobacteriaceae
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NCBI Genus |
Cyclobacterium
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NCBI Species |
Cyclobacterium amurskyense
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ISOLATION CLASSIFICATION | |
Ecosystem |
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Ecosystem Category |
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Ecosystem Type |
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Ecosystem Subtype |
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Specific Ecosystem |
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
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Metabolisms |
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Phenotypes |
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Energy Sources |
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