PROJECT INFORMATION
GOLD Project ID
Gp0120538  
Project Name
Cyclobacterium amurskyense KCTC 12363  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cyclobacterium amurskyense strain:KCTC 12363
NCBI BioProject Accession PRJNA289169
NCBI Locus Tag
CA2015  
NCBI BioSample Accession SAMN03846661
PI
Added By JGI automated process on 2015-09-09
Last Modified By Supratim Mukherjee on 2018-02-07
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Korea Research Institute of Bioscience and Biotechnology (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Cyclobacterium amurskyense KCTC 12363 using PacBio RS II sequencing platform  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1084973  (Link to NCBI )
Experiment Title PacBio sequencing of the Cyclobacterium amurskyense genome
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SMRTbell
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
Spot Length 0
PROJECT COMPOSITION
Study Cyclobacterium amurskyense strain:KCTC 12363 genome sequencing
Organism Cyclobacterium amurskyense KCTC 12363
Analysis Projects Cyclobacterium amurskyense KCTC 12363
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
PacBio Sequencing with P6-C4 chemistry  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0116137
Organism Name
Cyclobacterium amurskyense KCTC 12363  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Cyclobacterium  
Genus Synonyms
  
Species
Cyclobacterium amurskyense  
Subspecies
  
Species Synonyms
  
Strain
KCTC 12363  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
KCTC 12363  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9755  
Exemplar Name
Cyclobacterium amurskyense  
Taxon DOI
10.1601/tx.9755  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 320787
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Cyclobacteriaceae  
NCBI Genus
Cyclobacterium  
NCBI Species
Cyclobacterium amurskyense  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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