Studies
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56,015 |
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Biosamples
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183,991 |
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Sequencing Projects
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508,009 |
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Analysis Projects
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381,500 |
| Organisms | 480,470 |
| PROJECT INFORMATION | |||||||||||||||||||||
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GOLD Project ID
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Gp0120538
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Project Name
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Cyclobacterium amurskyense KCTC 12363
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Cyclobacterium amurskyense strain:KCTC 12363 | ||||||||||||||||||||
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NCBI BioProject Accession
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PRJNA289169 |
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NCBI Locus Tag
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CA2015
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NCBI BioSample Accession
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SAMN03846661 |
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Source Sample ID
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| PI | Unknown | ||||||||||||||||||||
| Added By | JGI automated process on 2015-09-09 | ||||||||||||||||||||
| Last Modified By | Supratim Mukherjee on 2018-02-07 | ||||||||||||||||||||
| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Environmental |
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Sequencing Center
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Korea Research Institute of Bioscience and Biotechnology
(South Korea)
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Collaborating Institute
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Funding Agency
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Project Description
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Genome sequencing of Cyclobacterium amurskyense KCTC 12363 using PacBio RS II sequencing platform
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Cyclobacterium amurskyense strain:KCTC 12363 genome sequencing |
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| Organism |
Cyclobacterium amurskyense KCTC 12363 |
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| Analysis Projects |
Cyclobacterium amurskyense KCTC 12363 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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PacBio Sequencing with P6-C4 chemistry
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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PacBio RS II |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0116137 |
| Organism Name |
Cyclobacterium amurskyense KCTC 12363
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
BACTEROIDETES
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| Genus |
Cyclobacterium
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| Genus Synonyms |
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| Species |
Cyclobacterium amurskyense
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| Subspecies |
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| Species Synonyms |
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| Strain |
KCTC 12363
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
KCTC 12363
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.9755
|
| Exemplar Name |
Cyclobacterium amurskyense
|
| Taxon DOI |
10.1601/tx.9755
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| Biosafety Level |
|
| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
|
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| NCBI Taxonomy ID |
320787 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
|
| NCBI Phylum |
Bacteroidota
|
| NCBI Class |
Cytophagia
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| NCBI Order |
Cytophagales
|
| NCBI Family |
Cyclobacteriaceae
|
| NCBI Genus |
Cyclobacterium
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| NCBI Species |
Cyclobacterium amurskyense
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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