Studies
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52,460 |
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Biosamples
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170,231 |
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Sequencing Projects
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472,495 |
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Analysis Projects
|
360,348 |
| Organisms | 460,370 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0120471
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Project Name
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Microcoleus sp. IPPAS B-353
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Microcoleus sp. IPPAS B-353 |
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NCBI BioProject Accession
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PRJNA203668 |
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NCBI Locus Tag
|
L855
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NCBI BioSample Accession
|
SAMN02205029 |
| PI | |
| Added By |
JGI automated process
on 2015-09-09 |
| Last Modified By | |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Environmental |
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Sequencing Center
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Chungnam National University
(South Korea)
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Collaborating Institute
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Funding Agency
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Project Description
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To elucidate physiological characteristics of cyanobacteria isolated from extreme environments, we sequenced a whole genome of Microcoleus sp. IPPAS B-353. Especially we have focused on photobiology and signaling pathway of this organism. We expected that it should be helpful for physiological and evolutionary studies of cyanobacteria with related species and also for crop trait improvements.
|
| Is JGI Project |
No
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Photosynthesis research
130(1-3):151-165
-concentrating mechanism.
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Microcoleus sp. IPPAS B-353 genome sequencing |
| Organism |
Microcoleus sp. IPPAS B-353 |
| Analysis Projects |
Microcoleus sp. IPPAS B-353 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0116073 |
| Organism Name |
Microcoleus sp. IPPAS B-353
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
CYANOBACTERIA
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| Genus |
Microcoleus
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| Genus Synonyms |
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| Species |
Microcoleus sp. IPPAS B-353
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| Subspecies |
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| Species Synonyms |
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| Strain |
IPPAS B-353
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1334624 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Cyanobacteria
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| NCBI Class |
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| NCBI Order |
Oscillatoriales
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| NCBI Family |
Microcoleaceae
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| NCBI Genus |
Microcoleus
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| NCBI Species |
Microcoleus sp. IPPAS B-353
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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