PROJECT INFORMATION
GOLD Project ID
Gp0120471  
Project Name
Microcoleus sp. IPPAS B-353  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Microcoleus sp. IPPAS B-353
NCBI BioProject Accession PRJNA203668
NCBI Locus Tag
L855  
NCBI BioSample Accession SAMN02205029
PI
Added By JGI automated process on 2015-09-09
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Chungnam National University (South Korea)
Collaborating Institute
  
Funding Agency
  
Project Description
To elucidate physiological characteristics of cyanobacteria isolated from extreme environments, we sequenced a whole genome of Microcoleus sp. IPPAS B-353. Especially we have focused on photobiology and signaling pathway of this organism. We expected that it should be helpful for physiological and evolutionary studies of cyanobacteria with related species and also for crop trait improvements.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Photosynthesis research 130(1-3):151-165 -concentrating mechanism.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Microcoleus sp. IPPAS B-353 genome sequencing
Organism Microcoleus sp. IPPAS B-353
Analysis Projects Microcoleus sp. IPPAS B-353
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0116073
Organism Name
Microcoleus sp. IPPAS B-353  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Microcoleus  
Genus Synonyms
  
Species
Microcoleus sp. IPPAS B-353  
Subspecies
  
Species Synonyms
  
Strain
IPPAS B-353  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1334624
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Oscillatoriales  
NCBI Family
Microcoleaceae  
NCBI Genus
Microcoleus  
NCBI Species
Microcoleus sp. IPPAS B-353  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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