Studies
|
56,335 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0119878
|
|
Project Name
|
Leptospirillum ferriphilum Sp-Cl
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Leptospirillum ferriphilum Genome sequencing |
|
NCBI BioProject Accession
|
PRJNA290892 |
|
NCBI Locus Tag
|
AOA54
|
|
NCBI BioSample Accession
|
SAMN03922415 |
|
Source Sample ID
|
|
| PI | Francisco Issotta |
| Added By | Francisco Issotta on 2015-08-19 |
| Last Modified By | Supratim Mukherjee on 2022-09-21 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
|
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Sequencing Center
|
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Collaborating Institute
|
|
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Funding Agency
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Project Description
|
Draft genome sequence of choride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
Standards in genomic sciences: Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile. PubMed: 26925196 DOI: 10.1186/s40793-016-0142-1 |
|
Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Leptospirillum ferriphilum Sp-Cl |
| Organism |
Leptospirillum ferriphilum Sp-Cl |
| Analysis Projects |
Leptospirillum ferriphilum Sp-Cl |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
|
Finishing Goal
|
Level 4: Annotation Directed |
|
Contamination Screening Input
|
|
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DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
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Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
454 GS FLX 454 |
|
Library Method
(MIGS-28)
|
GS FLX Titanium paired end libraries
|
|
Library Layout
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|
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Library Screening Method
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|
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Number Of Reads
|
463056
|
|
Read Size
|
250
|
|
Vector
|
|
| GC Percent |
54.4
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0115646 |
| Organism Name |
Leptospirillum ferriphilum Sp-Cl
|
| Other names (alias, synonyms, short names, common names) |
PLS Parcela 21
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
NITROSPIROTA
|
| Genus |
Leptospirillum
|
| Genus Synonyms |
|
| Species |
Leptospirillum ferriphilum
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Sp-Cl
|
| Strain Synonyms |
|
| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
178606 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Nitrospirota
|
| NCBI Class |
Nitrospiria
|
| NCBI Order |
Nitrospirales
|
| NCBI Family |
Nitrospiraceae
|
| NCBI Genus |
Leptospirillum
|
| NCBI Species |
Leptospirillum ferriphilum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
|
| Ecosystem Category |
Built environment
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
Mesophile
|
| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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