PROJECT INFORMATION
GOLD Project ID
Gp0119864  
Project Name
Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11
NCBI BioProject ID 375211
NCBI BioProject Accession PRJNA375211
NCBI Locus Tag
B1V23  
NCBI BioSample Accession SAMN06343779
PI Kelly Wrighton
Added By JGI automated process on 2015-08-15
Last Modified By Jagadish Sundaramurthi on 2021-01-15
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Lake water microbial communities from Ohio, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Nat Microbiol 4(2):352-361 Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2925262  (Link to NCBI )
Experiment Title Wagner 4 Time Series LW_2014_7_11
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name ASGYB
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Deep subsurface shale carbon reservoir microbial communities from Ohio and West Virginia, USA
Biosample Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11
Analysis Projects Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 (SPAdes)
Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11
Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 NMDC pilot
Number of Analysis Projects (AP) 3
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Lake water microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1647806
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lake  
Specific Ecosystem
  

 

 

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