Studies
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56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0118685
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|
Project Name
|
Corynebacterium frankenforstense DSM 45800
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|
Other Names
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|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Corynebacterium frankenforstense ST18(T) (=DSM 45800(T)) Genome sequencing |
|
NCBI BioProject Accession
|
PRJNA232093 |
|
NCBI Locus Tag
|
CFRA
|
|
NCBI BioSample Accession
|
SAMN02991553 |
|
Source Sample ID
|
|
| PI | Christian Rückert |
| Added By | Christian Rückert on 2015-07-11 |
| Last Modified By | JGI automated process on 2022-09-21 |
| Project Comments |
|
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Project Status
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Complete and Published
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Project Relevance
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|
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Sequencing Center
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Collaborating Institute
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Funding Agency
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Project Description
|
Complete genome sequence of Corynebacterium frankenforstense DSM 45800, isolated from mil taken from a milk bulk storage tank
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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International Journal of Systematic and Evolutionary Microbiology: 63(Pt 12):4495-501 Corynebacterium frankenforstense sp. nov. and Corynebacterium lactis sp. nov., isolated from raw cow milk. PubMed: 23907219 DOI: 10.1099/ijs.0.050757-0 |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Corynebacterium Type Strain Sequencing and Analysis Project |
| Organism |
Corynebacterium frankenforstense DSM 45800 |
| Analysis Projects |
Corynebacterium frankenforstense DSM 45800 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
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Contamination Screening Input
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|
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DNA Amplification Method
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|
|
Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
|
|
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DNA Amplification Kit
|
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Sequencing Technology
(MIGS-29)
|
Illumina Illumina MiSeq |
|
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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3367261 Illumina MiSeq
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|
Read Size
|
2x 250bp
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|
Vector
|
|
| GC Percent |
71.5
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0074705 |
| Organism Name |
Corynebacterium frankenforstense DSM 45800
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOMYCETOTA
|
| Genus |
Corynebacterium
|
| Genus Synonyms |
|
| Species |
Corynebacterium frankenforstense
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DSM 45800
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 45800
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.24840
|
| Exemplar Name |
Corynebacterium frankenforstense
|
| Taxon DOI |
10.1601/tx.24840
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
|
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ORGANISM TAXONOMY
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|
| NCBI Taxonomy ID |
1437875 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinomycetota
|
| NCBI Class |
Actinomycetes
|
| NCBI Order |
Mycobacteriales
|
| NCBI Family |
Corynebacteriaceae
|
| NCBI Genus |
Corynebacterium
|
| NCBI Species |
Corynebacterium frankenforstense
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
|
| Ecosystem Category |
Food production
|
| Ecosystem Type |
Dairy products
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
HE983827 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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