PROJECT INFORMATION
GOLD Project ID
Gp0117608  
Project Name
Bacillus coagulans DSM 1 = ATCC 7050  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Bacillus coagulans DSM 1 = ATCC 7050
NCBI BioProject Accession PRJNA238056
NCBI Locus Tag
BF29  
NCBI BioSample Accession SAMN03120846
PI
Added By JGI automated process on 2015-07-02
Last Modified By Rida Ali on 2015-09-25
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Los Alamos National Laboratory (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Bacillus coagulans ATCC 7050  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Genome announcements Complete genome sequences for 35 biothreat assay-relevant bacillus species.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX1143736  (Link to NCBI )
Experiment Title BDN_Illumina_LMP
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name HSKVN2401
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
 
SRA Experiment Id SRX1143737  (Link to NCBI )
Experiment Title BDN_PacBio
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 019182
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX1143735  (Link to NCBI )
Experiment Title BDN_Illumina_STD
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BDN_Illumina
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Complete Genome Sequences for Biothreat Assay-Relevant Bacillus Species
Organism Bacillus coagulans DSM 1
Analysis Projects Bacillus coagulans DSM 1 = ATCC 7050
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
PacBio RS
454
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013467
Organism Name
Bacillus coagulans DSM 1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Bacillus  
Genus Synonyms
  
Species
Bacillus coagulans  
Subspecies
  
Species Synonyms
  
Strain
DSM 1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 1  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4892  
Exemplar Name
Bacillus coagulans  
Taxon DOI
10.1601/tx.4892  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121088
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Bacillaceae  
NCBI Genus
Weizmannia  
NCBI Species
Weizmannia coagulans  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Dairy products  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 4560
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes Catalase positive
Energy Sources
  

 

 

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