PROJECT INFORMATION
GOLD Project ID
Gp0116435  
Project Name
Pseudarthrobacter chlorophenolicus DSM 12829  
Other Names
Arthrobacter chlorophenolicus DSM 12829  
Legacy GOLD ID
  
NCBI BioProject Name Arthrobacter chlorophenolicus DSM 12829
NCBI BioProject ID 303741
NCBI BioProject Accession PRJNA303741
NCBI Locus Tag
ATK27  
NCBI BioSample Accession SAMN04489738
PI Hans-Peter Klenk
Added By JGI automated process on 2015-06-23
Last Modified By JGI automated process on 2019-09-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Exploiting the genomes of the Actinobacteria: plant growth promoters and producers of natural products and energy relevant enzymes united in a taxonomically unresolved phylum  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2142242  (Link to NCBI )
Experiment Title Arthrobacter chlorophenolicus DSM 12829
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHTWS
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2142241  (Link to NCBI )
Experiment Title Arthrobacter chlorophenolicus DSM 12829
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHTWS
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2142240  (Link to NCBI )
Experiment Title Arthrobacter chlorophenolicus DSM 12829
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHTWS
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Sequencing the genomes of 1000 actinobacteria strains
Organism Pseudarthrobacter chlorophenolicus A6
Analysis Projects Pseudarthrobacter chlorophenolicus DSM 12829
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000939
Organism Name
Pseudarthrobacter chlorophenolicus A6  
Other names (alias, synonyms, short names, common names)
Arthrobacter chlorophenolicus A6  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Pseudarthrobacter  
Genus Synonyms
Arthrobacter  
Species
Pseudarthrobacter chlorophenolicus  
Subspecies
  
Species Synonyms
  
Strain
A6  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 12829  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5845  
Exemplar Name
Pseudarthrobacter chlorophenolicus  
Taxon DOI
10.1601/tx.28351  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 452863
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Micrococcaceae  
NCBI Genus
Pseudarthrobacter  
NCBI Species
Pseudarthrobacter chlorophenolicus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 267825
Genbank 16S ID AF102267
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Metabolisms Chlorophenol degrading
PAH-degrading
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?