PROJECT INFORMATION
GOLD Project ID
Gp0116434  
Project Name
Arenimonas sp. JGI 044  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Arenimonas sp. JGI 044
NCBI BioProject ID 340587
NCBI BioProject Accession PRJNA340587
NCBI Locus Tag
BGX47  
NCBI BioSample Accession SAMN05720292
PI Jennifer Pett-Ridge
Added By JGI automated process on 2015-06-23
Last Modified By JGI automated process on 2019-09-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Unraveling the rhizosphere carbon cycle: Using comparative metatranscriptomics to identify key processes involved in root-enhanced decomposition of organic matter (CSP 2014)  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2338746  (Link to NCBI )
Experiment Title Arenimonas bacterium JGI 044
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection other
Library Name BAGPO
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Avena fatua rhizosphere microbial communities from Hopland, California, USA
Organism Arenimonas sp. JGI 044
Analysis Projects Arenimonas sp. JGI 044 (contamination screened)
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
57-CSP1487.Pett_Ridge.EENB.SYBR.1.J22.sc_A08_064  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina NextSeq-HO
Library Method (MIGS-28)
Production RnD, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0113101
Organism Name
Arenimonas sp. JGI 044  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Arenimonas  
Genus Synonyms
  
Species
Arenimonas sp. JGI 044  
Subspecies
  
Species Synonyms
  
Strain
JGI 044  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1896650
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Xanthomonadales  
NCBI Family
Xanthomonadaceae  
NCBI Genus
Arenimonas  
NCBI Species
Arenimonas sp. JGI 044  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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