PROJECT INFORMATION
GOLD Project ID
Gp0116400  
Project Name
Actinopolyspora saharensis DSM 45459  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Actinopolyspora saharensis DSM 45459
NCBI BioProject ID 303807
NCBI BioProject Accession PRJNA303807
NCBI Locus Tag
ATK93  
NCBI BioSample Accession SAMN04489718
PI Hans-Peter Klenk
Added By JGI automated process on 2015-06-23
Last Modified By JGI automated process on 2020-09-19
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Exploiting the genomes of the Actinobacteria: plant growth promoters and producers of natural products and energy relevant enzymes united in a taxonomically unresolved phylum  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2142207  (Link to NCBI )
Experiment Title Actinopolyspora saharensis DSM 45459
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHTUY
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2142209  (Link to NCBI )
Experiment Title Actinopolyspora saharensis DSM 45459
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHTUY
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2142208  (Link to NCBI )
Experiment Title Actinopolyspora saharensis DSM 45459
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AHTUY
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Sequencing the genomes of 1000 actinobacteria strains
Organism Actinopolyspora saharensis DSM 45459
Analysis Projects Actinopolyspora saharensis DSM 45459
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0113082
Organism Name
Actinopolyspora saharensis DSM 45459  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Actinopolyspora  
Genus Synonyms
  
Species
Actinopolyspora saharensis  
Subspecies
  
Species Synonyms
  
Strain
DSM 45459  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 45459  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.24296  
Exemplar Name
Actinopolyspora saharensis  
Taxon DOI
10.1601/tx.24296  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 995062
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinomycetia  
NCBI Order
Actinopolysporales  
NCBI Family
Actinopolysporaceae  
NCBI Genus
Actinopolyspora  
NCBI Species
Actinopolyspora saharensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID HQ918198
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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