Studies
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56,334 |
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Biosamples
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196,988 |
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Sequencing Projects
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525,360 |
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Analysis Projects
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384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0116367
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Project Name
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Gemm-5 bacterium JGI 021
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name |
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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Source Sample ID
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| PI | Jennifer Pett-Ridge |
| Added By | JGI automated process on 2015-06-23 |
| Last Modified By | JGI automated process on 2022-09-05 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Unraveling the rhizosphere carbon cycle: Using comparative metatranscriptomics to identify key processes involved in root-enhanced decomposition of organic matter (CSP 2014)
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| Is JGI Project |
Yes
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
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Specimen
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Organism |
|
Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60000755 |
| JGI Portal Download | Raw Sequence Data |
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Avena fatua rhizosphere microbial communities from Hopland, California, USA |
| Organism |
Gemm-5 bacterium JGI 021 |
| Analysis Projects |
Gemm-5 bacterium JGI 021 (unscreened) Gemm-5 bacterium JGI 021 (contamination screened) |
| Number of Analysis Projects (AP) |
2 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
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Finishing Goal
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Level 1: Standard Draft |
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Contamination Screening Input
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DNA Amplification Method
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Sorting Technology
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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61-CSP1487.Pett_Ridge.EEN.SYBR.2.G19.sc_E08_056
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NextSeq-HO |
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Library Method
(MIGS-28)
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Production RnD, Plates
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0113053 |
| Organism Name |
Gemm-5 bacterium JGI 021
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
GEMMATIMONADOTA
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| Genus |
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| Genus Synonyms |
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| Species |
Gemm-5 bacterium JGI 021
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| Subspecies |
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| Species Synonyms |
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| Strain |
JGI 021
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
No
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| Culture Type |
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| Organism Type |
Natural
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| Uncultured Type |
Single Cell
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
219685 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Gemmatimonadota
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| NCBI Class |
Gemmatimonadetes
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| NCBI Order |
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| NCBI Family |
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| NCBI Genus |
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| NCBI Species |
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Motility |
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| Temperature Range |
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| Salinity |
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| Cell Diameter |
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| Cell Length |
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| Gram Staining |
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| Biotic Relationships |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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