PROJECT INFORMATION
GOLD Project ID
Gp0116339  
Project Name
Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5
NCBI BioProject ID 375666
NCBI BioProject Accession PRJNA375666
NCBI Locus Tag
B1Z77  
NCBI BioSample Accession SAMN06343968
PI Dale Pelletier
Added By JGI automated process on 2015-06-23
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Defining the functional diversity of the Populus root microbiome  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2843300  (Link to NCBI )
Experiment Title Soil MetaG P. TD hybrid SBSTD5
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name ATZHO
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Populus root and rhizosphere microbial communities from Tennessee, USA
Biosample Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5
Analysis Projects Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Low Input Fragment, 300bp, Tubes; Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 939928
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizosphere  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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