PROJECT INFORMATION
GOLD Project ID
Gp0114723  
Project Name
Dehalogenimonas formicexedens NSZ-14  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Dehalogenimonas formicexedens strain: NSZ-14 Genome Sequencing
NCBI BioProject Accession PRJNA319195
NCBI Locus Tag
  
NCBI BioSample Accession SAMN04881314
PI William Moe
Added By Trent Key on 2015-04-29
Last Modified By Supratim Mukherjee on 2017-02-09
Project Comments
  
Project Status
Complete and Published  
Project Relevance Comparative analysis
Tree of Life
Environmental
Bioremediation
Sequencing Center Seoul National University (South Korea)
University of Florida (USA)
Georgia Genomics Facility (USA)
Louisiana State University
Collaborating Institute
  
Funding Agency
  
Project Description
A strictly-anaerobic isolate that reductively dehalogenates polychlorinated alkanes  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Dehalogenimonas formicexedens NSZ-14
Organism Dehalogenimonas formicexedens NSZ-14
Analysis Projects Dehalogenimonas formicexedens NSZ-14
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina NextSeq
Library Method (MIGS-28)
PacBio SMRTbell, Illumina TruSeq preparation protocol  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
2x150 bp PE library Illumina, 20kb PacBio  
Vector
  
GC Percent
54  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0112390
Organism Name
Dehalogenimonas formicexedens NSZ-14  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROFLEXI  
Genus
Dehalogenimonas  
Genus Synonyms
  
Species
Dehalogenimonas formicexedens  
Subspecies
  
Species Synonyms
  
Strain
NSZ-14  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.29907  
Exemplar Name
Dehalogenimonas formicexedens  
Taxon DOI
10.1601/tx.29907  
Biosafety Level
1  
Organism Comments
Culture collection IDs: HAMBI 3672, JCM 19277, VKM B-3058  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1839801
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chloroflexi  
NCBI Class
Dehalococcoidia  
NCBI Order
  
NCBI Family
  
NCBI Genus
Dehalogenimonas  
NCBI Species
Dehalogenimonas formicexedens  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID KX274280
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
5.5  
Cell Diameter
0.4 – 1.1 μm  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Chemotroph

 

 

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