PROJECT INFORMATION
GOLD Project ID
Gp0113054  
Project Name
Chitinophaga filiformis DSM 527  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Chitinophaga filiformis DSM 527
NCBI BioProject Accession PRJNA303605
NCBI Locus Tag
ATI91  
NCBI BioSample Accession SAMN04488121
PI Markus Göker
Added By JGI automated process on 2015-04-06
Last Modified By Supratim Mukherjee on 2020-10-19
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase III the genomes of soil and plant-associated and newly described type strains  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2130033  (Link to NCBI )
Experiment Title Chitinophaga filiformis DSM 527
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AOOSW
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the genomes of soil and plant-associated and newly described type strains
Organism Chitinophaga filiformis DSM 527
Analysis Projects Chitinophaga filiformis DSM 527
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0028658
Organism Name
Chitinophaga filiformis DSM 527  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Chitinophaga  
Genus Synonyms
  
Species
Chitinophaga filiformis  
Subspecies
  
Species Synonyms
  
Strain
DSM 527  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 527  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8255  
Exemplar Name
Chitinophaga filiformis  
Taxon DOI
10.1601/tx.9791  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 104663
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Chitinophagia  
NCBI Order
Chitinophagales  
NCBI Family
Chitinophagaceae  
NCBI Genus
Chitinophaga  
NCBI Species
Chitinophaga filiformis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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