PROJECT INFORMATION
GOLD Project ID
Gp0112927  
Project Name
Pseudomonas chlororaphis chlororaphis ATCC 9446  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudomonas chlororaphis subsp. chlororaphis ATCC 9446
NCBI BioProject Accession PRJNA303506
NCBI Locus Tag
ATH92  
NCBI BioSample Accession SAMN04488482
PI Joyce Loper
Added By JGI automated process on 2015-04-06
Last Modified By JGI automated process on 2020-08-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Diversity of Pseudomonas spp.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2139317  (Link to NCBI )
Experiment Title Pseudomonas chlororaphis subsp. chlororaphis ATCC 9446
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ANUPZ
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2139316  (Link to NCBI )
Experiment Title Pseudomonas chlororaphis subsp. chlororaphis ATCC 9446
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ANUPZ
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2139318  (Link to NCBI )
Experiment Title Pseudomonas chlororaphis subsp. chlororaphis ATCC 9446
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ANUPZ
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Genome sequencing of a diverse group of Pseudomonas species
Organism Pseudomonas chlororaphis chlororaphis ATCC 9446
Analysis Projects Pseudomonas chlororaphis chlororaphis ATCC 9446
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0111269
Organism Name
Pseudomonas chlororaphis chlororaphis ATCC 9446  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas chlororaphis  
Subspecies
  
Species Synonyms
  
Strain
ATCC 9446  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 9446  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2586  
Exemplar Name
Pseudomonas chlororaphis chlororaphis  
Taxon DOI
10.1601/tx.10971  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 587753
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas chlororaphis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?