Studies
|
56,329 |
|
Biosamples
|
196,776 |
|
Sequencing Projects
|
525,145 |
|
Analysis Projects
|
385,404 |
| Organisms | 484,214 |
| PROJECT INFORMATION | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GOLD Project ID
|
Gp0112510
|
||||||||||||||||||
|
Project Name
|
Shimia haliotis DSM 28453
|
||||||||||||||||||
|
Other Names
|
|
||||||||||||||||||
|
Legacy GOLD ID
|
|
||||||||||||||||||
| NCBI BioProject Name | Shimia haliotis DSM 28453 | ||||||||||||||||||
|
NCBI BioProject Accession
|
PRJNA303482 |
||||||||||||||||||
|
NCBI Locus Tag
|
ATH69
|
||||||||||||||||||
|
NCBI BioSample Accession
|
SAMN04488036 |
||||||||||||||||||
|
Source Sample ID
|
|
||||||||||||||||||
| PI | Markus Göker | ||||||||||||||||||
| Added By | JGI automated process on 2015-04-01 | ||||||||||||||||||
| Last Modified By | JGI automated process on 2022-09-05 | ||||||||||||||||||
| Project Comments |
|
||||||||||||||||||
|
Project Status
|
Permanent Draft
|
||||||||||||||||||
|
Project Relevance
|
|
||||||||||||||||||
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
||||||||||||||||||
|
Collaborating Institute
|
|
||||||||||||||||||
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
||||||||||||||||||
|
Project Description
|
Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II: from individual species to whole genera
|
||||||||||||||||||
| Is JGI Project |
Yes
|
||||||||||||||||||
|
Project Information Visibility
|
Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
|
Specimen
|
Organism |
||||||||||||||||||
|
Nucleic Acid
|
DNA |
||||||||||||||||||
|
Sequencing Strategy
|
Whole Genome Sequencing
|
||||||||||||||||||
| EXTERNAL PROJECT LINKS | |||||||||||||||||||
|
JGI Data Utilization Status
|
Restricted
|
||||||||||||||||||
|
JGI Award DOI
|
10.46936/10.25585/60001024 |
||||||||||||||||||
| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
|
Genome Publications
|
|
||||||||||||||||||
|
Other Publications
|
|
||||||||||||||||||
|
Ignored Publications
|
|
||||||||||||||||||
|
Unassigned Publications
|
|
||||||||||||||||||
| SRA Experiment |
|
||||||||||||||||||
| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera |
||||||||||||||||||
| Organism |
Shimia haliotis DSM 28453 |
||||||||||||||||||
| Analysis Projects |
Shimia haliotis DSM 28453 |
||||||||||||||||||
| Number of Analysis Projects (AP) |
1 |
||||||||||||||||||
| Number of Derived Analyis Projects (DAP) |
0
|
||||||||||||||||||
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2500-1TB |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0111033 |
| Organism Name |
Shimia haliotis DSM 28453
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
Shimia
|
| Genus Synonyms |
|
| Species |
Shimia haliotis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DSM 28453
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 28453
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.24771
|
| Exemplar Name |
Shimia haliotis
|
| Taxon DOI |
10.1601/tx.24771
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1280847 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Rhodobacterales
|
| NCBI Family |
Roseobacteraceae
|
| NCBI Genus |
Shimia
|
| NCBI Species |
Shimia haliotis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mollusca
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
KC196071 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
