PROJECT INFORMATION
GOLD Project ID
Gp0111444  
Project Name
Methanoculleus sediminis S3Fa  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methanoculleus sp. S3Fa Genome sequencing
NCBI BioProject ID 273166
NCBI BioProject Accession PRJNA273166
NCBI Locus Tag
  
NCBI BioSample Accession SAMN03288802
PI Sheng-Chung Chen
Added By Sheng-Chung Chen on 2015-03-10
Last Modified By Hema Katta on 2017-11-10
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center National Chung Hsing University (Taiwan)
Collaborating Institute
  
Funding Agency
  
Project Description
Draft genome analysis of Methanoculleus sediminis S3Fa  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Draft Genome Sequence of Methanoculleus sediminis S3FaT, a Hydrogenotrophic Methanogen Isolated from a Submarine Mud Volcano in Taiwan.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Methanoculleus sediminis S3Fa
Organism Methanoculleus sediminis S3Fa
Analysis Projects Methanoculleus sediminis S3Fa
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
Illumina, 2x300 bp  
Number Of Reads
6710026 pyrosequencing  
Read Size
300bp  
Vector
  
GC Percent
62  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0110489
Organism Name
Methanoculleus sediminis S3Fa  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOMICROBIA  
Genus
Methanoculleus  
Genus Synonyms
  
Species
Methanoculleus sediminis  
Subspecies
  
Species Synonyms
  
Strain
S3Fa  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 29354  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.26897  
Exemplar Name
Methanoculleus sediminis  
Taxon DOI
10.1601/tx.26897  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1550566
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanomicrobia  
NCBI Order
Methanomicrobiales  
NCBI Family
Methanomicrobiaceae  
NCBI Genus
Methanoculleus  
NCBI Species
Methanoculleus sediminis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Volcanic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID KM111600
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Psychrophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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