PROJECT INFORMATION
GOLD Project ID
Gp0109025  
Project Name
Desulfitobacterium hafniense PCE-S  
Other Names
  
Legacy ER Project ID
80047  
Legacy GOLD ID
Gi0080047  
NCBI BioProject Name Desulfitobacterium hafniense
NCBI BioProject Accession PRJEB6708
NCBI Locus Tag
DPCES  
NCBI BioSample Accession SAMEA2636342
PI Unknown
Added By JGI automated process on 2014-11-03
Last Modified By Mahrukh Mujeeb on 2017-07-07
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center Wageningen University (Netherlands)
GATC-Biotech AG, Konstanz, Germany (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
The bacterium Desulfitobacterium hafniense PCE-S was sequenced and investigated.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Standards in genomic sciences Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-S.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX520709  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Desulfitobacterium hafniense PCE-S
Organism Desulfitobacterium hafniense PCE-S
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
5666696  
Vector
  
GC Percent
47  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0095283
Organism Name
Desulfitobacterium hafniense PCE-S  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Desulfitobacterium  
Genus Synonyms
  
Species
Desulfitobacterium hafniense  
Subspecies
  
Species Synonyms
  
Strain
PCE-S  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 14645  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 49338
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Eubacteriales  
NCBI Family
Desulfitobacteriaceae  
NCBI Genus
Desulfitobacterium  
NCBI Species
Desulfitobacterium hafniense  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Bioreactor  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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