PROJECT INFORMATION
GOLD Project ID
Gp0108934  
Project Name
Geobacter pickeringii G13  
Other Names
  
Legacy ER Project ID
79956  
Legacy GOLD ID
Gi0079956  
NCBI BioProject Name Geobacter pickeringii
NCBI BioProject ID 263119
NCBI BioProject Accession PRJNA263119
NCBI Locus Tag
GPK  
NCBI BioSample Accession SAMN03096815
PI
Added By JGI automated process on 2014-11-03
Last Modified By Rida Ali on 2015-08-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center University of Minnesota (USA)
Mayo Clinic
Collaborating Institute
  
Funding Agency
  
Project Description
Metal reduction occurs across several phyla of bacteria, but the underlying genetic and biochemical mechanisms are still poorly understood. This submission provides the complete genome sequence of Geobacter pickeringii G13, a freshwater metal-reducing Deltaproteobacterium isolated from kaolin clays in Georgia, USA. This isolate is of interest for its reported ability to utilize methanol.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Complete Genome of Geobacter pickeringii G13T, a Metal-Reducing Isolate from Sedimentary Kaolin Deposits.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX796422  (Link to NCBI )
Experiment Title Geobacter pickeringii G13 base modification detection and motif analysis
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Gpick YZ1
Library Layout SINGLE
Library Instrument PAC_BIO_RS
Spot Length 0
PROJECT COMPOSITION
Study Geobacter pickeringii G13
Organism Geobacter pickeringii G13
Analysis Projects Geobacter pickeringii G13
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0108934
Organism Name
Geobacter pickeringii G13  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Geobacter  
Genus Synonyms
  
Species
Geobacter pickeringii  
Subspecies
  
Species Synonyms
  
Strain
G13  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10738  
Exemplar Name
Geobacter pickeringii  
Taxon DOI
10.1601/tx.10738  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 345632
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfuromonadales  
NCBI Family
Geobacteraceae  
NCBI Genus
Geobacter  
NCBI Species
Geobacter pickeringii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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