PROJECT INFORMATION
GOLD Project ID
Gp0108294  
Project Name
Halobacterium salinarum R1, DSM 671  
Other Names
  
Legacy ER Project ID
79713  
Legacy GOLD ID
  
NCBI BioProject Name Halobacterium salinarum R1, DSM 671
NCBI BioProject ID 298090
NCBI BioProject Accession PRJNA298090
NCBI Locus Tag
APR06  
NCBI BioSample Accession SAMN04244563
PI Markus Göker
Added By JGI automated process on 2014-10-27
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II: from individual species to whole genera  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX6767149  (Link to NCBI )
Experiment Title Halobacterium salinarum DSM 671
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name YHOC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera
Organism Halobacterium salinarum R1, DSM 671
Analysis Projects Halobacterium salinarum R1, DSM 671
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0002300
Organism Name
Halobacterium salinarum R1, DSM 671  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-HALOBACTERIA  
Genus
Halobacterium  
Genus Synonyms
  
Species
Halobacterium salinarum  
Subspecies
  
Species Synonyms
  
Strain
R1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 671  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 478009
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Halobacteria  
NCBI Order
Halobacteriales  
NCBI Family
Halobacteriaceae  
NCBI Genus
Halobacterium  
NCBI Species
Halobacterium salinarum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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