PROJECT INFORMATION
GOLD Project ID
Gp0107589  
Project Name
Geoalkalibacter ferrihydriticus DSM 17813  
Other Names
  
Legacy ER Project ID
79384  
Legacy GOLD ID
Gi0079384  
NCBI BioProject Name Geoalkalibacter ferrihydriticus
NCBI BioProject ID 263164
NCBI BioProject Accession PRJNA263164
NCBI Locus Tag
GFER  
NCBI BioSample Accession SAMN03097396
PI Jonathan Badalamenti
Added By Jyothi Mallajosyula on 2014-10-06
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Arizona State University (USA)
Collaborating Institute University of Minnesota (USA)
Funding Agency
  
Project Description
As of this submission, genomes from halophilic representatives of the Geobacteraceae family of metal-reducing Deltaproteobacteria are lacking. This submission provides the draft genome of Geoalkalibacter ferrihydriticus DSM 17813, an alkaliphilic, halotolerant, iron-reducing bacterium isolated from Lake Khadyn (Russia). This and other genomes from haloalkaliphilic Geobacteraceae offer important insight into the diversity of metabolic and extracellular respiratory pathways in metal-reducing bacteria.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Genomes of Geoalkalibacter ferrihydriticus Z-0531T and Geoalkalibacter subterraneus Red1T, Two Haloalkaliphilic Metal-Reducing Deltaproteobacteria.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX808753  (Link to NCBI )
Experiment Title Geoalkalibacter ferrihydriticus raw Illumina reads
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name DSM17813
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
PROJECT COMPOSITION
Study Iron-reducing bacterium from Lake Khadyn, Russia
Organism Geoalkalibacter ferrihydriticus DSM 17813
Analysis Projects Geoalkalibacter ferrihydriticus DSM 17813
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
Illumina TruSeq  
Number Of Reads
4000000  
Read Size
  
Vector
  
GC Percent
58  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0107589
Organism Name
Geoalkalibacter ferrihydriticus DSM 17813  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Geoalkalibacter  
Genus Synonyms
  
Species
Geoalkalibacter ferrihydriticus  
Subspecies
  
Species Synonyms
  
Strain
DSM 17813  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 17813  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10736  
Exemplar Name
Geoalkalibacter ferrihydriticus  
Taxon DOI
10.1601/tx.10736  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121915
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfuromonadales  
NCBI Family
Geobacteraceae  
NCBI Genus
Geoalkalibacter  
NCBI Species
Geoalkalibacter ferrihydriticus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 691203
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
7.8-10.0  
Cell Diameter
0.3-0.5 um  
Cell Length
1.0-1.5 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases
  
Known Habitats Aquatic
Soda lake
Metabolisms Iron reducer
Phenotypes Alkaliphile
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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