PROJECT INFORMATION
GOLD Project ID
Gp0103695  
Project Name
Stackebrandtia albiflava DSM 45044  
Other Names
  
Legacy ER Project ID
77779  
Legacy GOLD ID
Gi0077779  
NCBI BioProject Name
  
NCBI BioProject ID 262195
NCBI BioProject Accession PRJNA262195
NCBI Locus Tag
LX16  
NCBI BioSample Accession SAMN02745826
PI Nikos Kyrpides
Added By JGI automated process on 2014-08-25
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications Standards in genomic sciences 9(3):1278-84 Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project.

SRA Experiment
 
SRA Experiment Id SRX2118919  (Link to NCBI )
Experiment Title Stackebrandtia albiflava DSM 45044
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name YXWH
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Stackebrandtia albiflava DSM 45044
Analysis Projects Stackebrandtia albiflava DSM 45044
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013334
Organism Name
Stackebrandtia albiflava DSM 45044  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Stackebrandtia  
Genus Synonyms
  
Species
Stackebrandtia albiflava  
Subspecies
  
Species Synonyms
  
Strain
DSM 45044  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 45044  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.14130  
Exemplar Name
Stackebrandtia albiflava  
Taxon DOI
10.1601/tx.14130  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1123293
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Glycomycetales  
NCBI Family
Glycomycetaceae  
NCBI Genus
Stackebrandtia  
NCBI Species
Stackebrandtia albiflava  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 690865
Genbank 16S ID DQ985165
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms Nitrate reducer
Phenotypes Catalase positive
Energy Sources
  

 

 

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