PROJECT INFORMATION
GOLD Project ID
Gp0103341  
Project Name
Aggregatibacter aphrophilus NJ8700  
Other Names
  
Legacy ER Project ID
77543  
Legacy GOLD ID
Gi0077543  
NCBI BioProject Name Aggregatibacter aphrophilus NJ8700
NCBI BioProject ID 258126
NCBI BioProject Accession PRJNA258126
NCBI Locus Tag
NJ8700  
NCBI BioSample Accession SAMN02988840
PI
Added By JGI automated process on 2014-08-22
Last Modified By
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center University of Southern California (USA)
University of Washington (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Reseuqencing of the strain by Illumina platform  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Aggregatibacter aphrophilus NJ8700 Genome sequencing
Organism Aggregatibacter aphrophilus NJ8700
Analysis Projects Aggregatibacter aphrophilus NJ8700
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0001493
Organism Name
Aggregatibacter aphrophilus NJ8700  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Aggregatibacter  
Genus Synonyms
  
Species
Aggregatibacter aphrophilus  
Subspecies
  
Species Synonyms
  
Strain
NJ8700  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 634176
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pasteurellales  
NCBI Family
Pasteurellaceae  
NCBI Genus
Aggregatibacter  
NCBI Species
Aggregatibacter aphrophilus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral cavity  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Endocarditis
Known Habitats Host
Oral cavity
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources
  

 

 

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