PROJECT INFORMATION
GOLD Project ID
Gp0102825  
Project Name
Marvinbryantia formatexigens I-52  
Other Names
  
Legacy ER Project ID
77196  
Legacy GOLD ID
Gi0077196  
NCBI BioProject Name Marvinbryantia formatexigens DSM 14469
NCBI BioProject ID 262409
NCBI BioProject Accession PRJNA262409
NCBI Locus Tag
LZ00  
NCBI BioSample Accession SAMN05660368
PI Nikos Kyrpides
Added By JGI automated process on 2014-08-14
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2120122  (Link to NCBI )
Experiment Title Marvinbryantia formatexigens DSM 14469
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name YYNN
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Marvinbryantia formatexigens I-52
Analysis Projects Marvinbryantia formatexigens I-52
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000878
Organism Name
Marvinbryantia formatexigens I-52  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Marvinbryantia  
Genus Synonyms
Bryantella  
Species
Marvinbryantia formatexigens  
Subspecies
  
Species Synonyms
  
Strain
I-52  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 14469  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4072  
Exemplar Name
Bryantella formatexigens  
Taxon DOI
10.1601/tx.4072  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 168384
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Lachnospiraceae  
NCBI Genus
Marvinbryantia  
NCBI Species
Marvinbryantia formatexigens  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 376865
Genbank 16S ID AJ318527
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
0.7 um  
Cell Length
1.2 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Human intestinal microflora
Host
Gastrointestinal tract
Human fecal
Feces
Metabolisms Cellulose degrader
Phenotypes Catalase negative
Energy Sources Chemoorganotroph

 

 

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