PROJECT INFORMATION
GOLD Project ID
Gp0100822  
Project Name
Formosa agariphila KMM 3901  
Other Names
  
Legacy ER Project ID
76237  
Legacy GOLD ID
Gi0076237, Gi0076237  
NCBI BioProject Name Formosa agariphila
NCBI BioProject Accession PRJEB3965
NCBI Locus Tag
BN863  
NCBI BioSample Accession
PI Mann, Alexander
Added By JGI automated process on 2014-07-25
Last Modified By Michelle Isbandi on 2014-08-01
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Max Planck Institute for Marine Microbiology
Collaborating Institute
  
Funding Agency
  
Project Description
In recent years, representatives of the Bacteroidetes have been increasingly recognized as specialists for the degradation of macromolecules. Formosa constitutes a Bacteroidetes genus within the class Flavobacteria, whose members have been found in marine habitats with high levels of organic matter, such as in association with algae, invertebrates and fecal pellets. Here we report on the generation and analysis of the genome of the Formosa agariphila type strain KMM 3901T, an isolate from the green algae Acrosiphonia sonderi. F. agariphila is a facultative anaerobe with the capacity for mixed acid fermentation and denitrification. Its genome harbors 129 proteases and 88 glycoside hydrolases, indicating a pronounced specialization on the degradation of proteins, polysaccharides and glycoproteins. 65 of the glycoside hydrolases are organized in at least 13 distinct polysaccharide utilization loci, where they are clustered with TonB-dependent receptors, SusD-like proteins, sensors/transcription factors, transporters and oftentimes sulfatases. These loci play a pivotal role in bacteroidetal polysaccharide biodegradation, and in the case of F. agariphila revealed the capacity to degrade a wide range of algal polysaccharide from green, red and brown algae and thus a strong adaption towards an algae-associated lifestyle.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Applied and environmental microbiology 79(21):6813-22 The genome of the alga-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for degradation of algal polysaccharides.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study The genome of the algae-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for the degradation of algal polysaccharides
Organism Formosa agariphila KMM 3901
Analysis Projects Formosa agariphila KMM 3901
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
33  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0100822
Organism Name
Formosa agariphila KMM 3901  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Formosa  
Genus Synonyms
  
Species
Formosa agariphila  
Subspecies
  
Species Synonyms
  
Strain
KMM 3901  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
KMM 3901  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9857  
Exemplar Name
Formosa agariphila  
Taxon DOI
10.1601/tx.9857  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1347342
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Formosa  
NCBI Species
Formosa agariphila  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
  
Motility
Motile  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Algae
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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