PROJECT INFORMATION
GOLD Project ID
Gp0095248  
Project Name
Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid  
Other Names
  
Legacy ER Sample ID
26579  
Legacy GOLD ID
Gs0005853  
NCBI BioProject Name Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid
NCBI BioProject ID 464667
NCBI BioProject Accession PRJNA464667
NCBI Locus Tag
DF526  
NCBI BioSample Accession SAMN09092745
PI Matthias Hess
Added By JGI automated process on 2014-06-05
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis
Biosample Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid
Analysis Projects Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid (Eukaryote Metatranscriptome)
Coassembly of Cow Y Rumen Fluid
Coassembly of Cow X and Y Rumen Fluid
Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid (Metagenome Metatranscriptome Expression - Other) - mapped to GOLD AP Ga0061015 (Cow Y Rumen Fluid)
Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid (Metagenome Metatranscriptome Expression - Other) - mapped to GOLD AP Ga0061018 (Cow X and Y Rumen Fluid)
Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid (Metagenome Metatranscriptome Expression - Self)
Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid (Metagenome Metatranscriptome Expression - Other) (Mapping to IMG Taxon 3300031085)
Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid (Metagenome Metatranscriptome Expression - Other) (Mapping to IMG Taxon 3300030773)
Number of Analysis Projects (AP)
8  
Number of Derived Analyis Projects (DAP)
19  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow Y-2 rumen fluid
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 506599
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Foregut  
Specific Ecosystem
  

 

 

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