PROJECT INFORMATION
GOLD Project ID
Gp0095243  
Project Name
Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass  
Other Names
  
Legacy ER Sample ID
26574  
Legacy GOLD ID
Gs0005848  
NCBI BioProject Name Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass
NCBI BioProject Accession PRJNA410282
NCBI Locus Tag
CPB63  
NCBI BioSample Accession SAMN07687299
PI Matthias Hess
Added By JGI automated process on 2014-06-05
Last Modified By JGI automated process on 2022-09-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60000804
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX3338962  (Link to NCBI )
Experiment Title Cow rumen Metatranscriptome - Cow X-3 switchgrass
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name UWZZ
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Fungi-associated bovine rumen microbial communities from the University of Illinois at Urbana-Champaign, USA, for metatranscriptome analysis
Biosample Cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass
Analysis Projects Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Community Metatranscriptome Expression - Other) - mapped to GOLD AP Ga0061013 (Cow X Switchgrass)
Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Community Metatranscriptome Expression - Other) (Mapping to IMG Taxon 3300031118)
Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Community Metatranscriptome Expression - Other) (Mapping to IMG Taxon 3300030772)
Coassembly of Cow X Switchgrass
Coassembly of Cow X and Y Switchgrass
Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Community Metatranscriptome Expression - Self)
Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Community Metatranscriptome Expression - Other) - mapped to GOLD AP Ga0061019 (Cow X and Y Switchgrass)
Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Metatranscriptome)
Number of Analysis Projects (AP) 8
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass
Other Names (alias, synonyms, short names)
  
Sample Description
  
SAMPLE TAXONOMY
NCBI Taxonomy ID 506599
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Stomach  
Specific Ecosystem
Rumen  
EXPERIMENT
Experimental Conditions
  

 

 

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