PROJECT INFORMATION
GOLD Project ID
Gp0093941  
Project Name
Pseudomonas duriflava CGMCC 1.6858  
Other Names
  
Legacy ER Project ID
73698  
Legacy GOLD ID
Gi0073698  
NCBI BioProject Name Pseudomonas duriflava CGMCC 1.6858
NCBI BioProject ID 255608
NCBI BioProject Accession PRJNA255608
NCBI Locus Tag
IQ22  
NCBI BioSample Accession SAMN02927908
PI William Whitman
Added By JGI automated process on 2014-05-05
Last Modified By JGI automated process on 2020-04-13
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase III the genomes of soil and plant-associated and newly described type strains  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications Standards in genomic sciences Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains.

SRA Experiment
 
SRA Experiment Id SRX2112687  (Link to NCBI )
Experiment Title Pseudomonas duriflava CGMCC 1.6858
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name WHAN
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the genomes of soil and plant-associated and newly described type strains
Organism Pseudomonas duriflava CGMCC 1.6858
Analysis Projects Pseudomonas duriflava CGMCC 1.6858
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0093941
Organism Name
Pseudomonas duriflava CGMCC 1.6858  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas duriflava  
Subspecies
  
Species Synonyms
  
Strain
CGMCC 1.6858  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CGMCC 1.6858  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13546  
Exemplar Name
Pseudomonas duriflava  
Taxon DOI
10.1601/tx.13546  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 459528
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas duriflava  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Desert  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
  
Salinity
  
pH
5  
Cell Diameter
0.6–0.8 μm  
Cell Length
0.7–1.1 μm  
Color
Yellow  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Desert soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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