PROJECT INFORMATION
GOLD Project ID
Gp0092140  
Project Name
Prevotella timonensis 4401737, DSM 22865  
Other Names
  
Legacy ER Project ID
72851  
Legacy GOLD ID
Gi0072851  
NCBI BioProject Name Prevotella timonensis 4401737 = DSM 22865 = JCM 15640
NCBI BioProject ID 243171
NCBI BioProject Accession PRJDB595
NCBI Locus Tag
JCM15640  
NCBI BioSample Accession SAMD00009486
PI
Added By JGI automated process on 2014-04-15
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of Tokyo (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
For the promotion of various studies, we perform genome sequencing of the important 300 microbial organisms to human and the environment.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id DRX002543  (Link to NCBI )
Experiment Title Whole genome analysis of Prevotella timonensis JCM 15640
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument ION_TORRENT_PGM
PROJECT COMPOSITION
Study Prevotella Genome sequencing - Univ of Tokyo
Organism Prevotella timonensis 4401737, DSM 22865
Analysis Projects Prevotella timonensis 4401737, DSM 22865
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013167
Organism Name
Prevotella timonensis 4401737, DSM 22865  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Prevotella  
Genus Synonyms
  
Species
Prevotella timonensis  
Subspecies
  
Species Synonyms
  
Strain
4401737  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 22865  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10960  
Exemplar Name
Prevotella timonensis  
Taxon DOI
10.1601/tx.10960  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1122992
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
Prevotellaceae  
NCBI Genus
Prevotella  
NCBI Species
Prevotella timonensis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Skin  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 701800
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
0.3-0.5 um  
Cell Length
0.8-1.4 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human
Metabolisms Saccharolytic
Phenotypes Catalase negative
Energy Sources
  

 

 

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