Studies
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56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0091700
|
|
Project Name
|
Prochloron didemni P4-Palau
|
|
Other Names
|
|
|
Legacy ER Project ID
|
72647
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name |
Prochloron didemni
|
|
NCBI BioProject Accession
|
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NCBI Locus Tag
|
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NCBI BioSample Accession
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Source Sample ID
|
|
| PI | Unknown |
| Added By | Nikos Kyrpides on 2014-04-12 |
| Last Modified By | Nikos Kyrpides on 2014-04-12 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Biotechnological |
|
Sequencing Center
|
J. Craig Venter Institute
(USA)
|
|
Collaborating Institute
|
University of Utah
(USA)
University of California, San Diego (USA) |
|
Funding Agency
|
National Science Foundation (NSF)
(USA)
|
|
Project Description
|
Prochloron didemni produces patellamides, small cyclic peptides, which may be useful in treating cancer. The genome sequence of this organism will provide information on the production and regulation of these compounds.
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Prochloron didemni |
| Organism |
Prochloron didemni P4-Palau |
| Analysis Projects |
Prochloron didemni P4-Palau |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
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Finishing Goal
|
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
|
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Single Cell Lysis Approach
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Sequencing Comments
|
|
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DNA Amplification Kit
|
|
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Sequencing Technology
(MIGS-29)
|
|
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Library Method
(MIGS-28)
|
|
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0091700 |
| Organism Name |
Prochloron didemni P4-Palau
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
CYANOBACTERIOTA
|
| Genus |
Prochloron
|
| Genus Synonyms |
|
| Species |
Prochloron didemni
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
P4-Palau
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
910450 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Cyanobacteriota
|
| NCBI Class |
Cyanophyceae
|
| NCBI Order |
Synechococcales
|
| NCBI Family |
Prochloraceae
|
| NCBI Genus |
Prochloron
|
| NCBI Species |
Prochloron didemni
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
Lissoclinum patella
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Obligate symbiont Fresh water |
| Metabolisms |
Patellamides producer |
| Phenotypes |
|
| Energy Sources |
Photosynthetic |
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
|
| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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