PROJECT INFORMATION
GOLD Project ID
Gp0091268  
Project Name
Candidatus Acidianus copahuensis ALE1  
Other Names
  
Legacy ER Project ID
72478  
Legacy GOLD ID
Gi0072478  
NCBI BioProject Name Candidatus Acidianus copahuensis strain:ALE1
NCBI BioProject ID 240874
NCBI BioProject Accession PRJNA240874
NCBI Locus Tag
CM19  
NCBI BioSample Accession SAMN02679956
PI
Added By JGI automated process on 2014-03-27
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center INDEAR Instituto de Agrobiotecnologia Rosario (Argentina)
Collaborating Institute
  
Funding Agency
  
Project Description
Acidianus copahuensis ALE1, an archaea from the Crenarchaeota phylum, was isolated from hot springs in Copahue, and until now not reported anywhere else. A copahuensis is a facultative chemolithoautotrophic, thermoacidophilic organism (optimal growth temperature 75°C, pH 2.5). It is capable of autotrophic growth; aerobically using iron and different sulfur compounds as energy sources, and anaerobically using H2 and S as electron donors and Fe(III) or S as final electron acceptors. It can also grow heterotrophically using yeast extract or glucose. The genome sequence of A. copahuensis ALE1 strain was obtained using a whole-genome shotgun (WGS) strategy with a 454-FLX Titanium pyrosequencer at INDEAR, Argentina. Assembly was done using celera assembler version 7.0 with 52X genome coverage that generated a total of 68 contigs. The draft genome is 2,454,023 bases in length. The G+C content of the genomic DNA is 35.63 mol%.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Candidatus Acidianus copahuensis ALE1
Organism Candidatus Acidianus copahuensis ALE1
Analysis Projects Candidatus Acidianus copahuensis ALE1
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
36  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0091268
Organism Name
Candidatus Acidianus copahuensis ALE1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
CRENARCHAEOTA-THERMOPROTEI  
Genus
  
Genus Synonyms
  
Species
Candidatus Acidianus copahuensis ALE1  
Subspecies
  
Species Synonyms
  
Strain
ALE1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.32005  
Exemplar Name
Acidianus copahuensis  
Taxon DOI
10.1601/tx.32005  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1160895
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Crenarchaeota  
NCBI Class
Thermoprotei  
NCBI Order
Sulfolobales  
NCBI Family
Sulfolobaceae  
NCBI Genus
Acidianus  
NCBI Species
Candidatus Acidianus copahuensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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