Studies
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51,819 |
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Biosamples
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152,090 |
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Sequencing Projects
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451,173 |
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Analysis Projects
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342,374 |
| Organisms | 427,779 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0091268
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Project Name
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Candidatus Acidianus copahuensis ALE1
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Other Names
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Legacy ER Project ID
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72478
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Legacy GOLD ID
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Gi0072478
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| NCBI BioProject Name | Candidatus Acidianus copahuensis strain:ALE1 |
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NCBI BioProject Accession
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PRJNA240874 |
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NCBI Locus Tag
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CM19
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NCBI BioSample Accession
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SAMN02679956 |
| PI | |
| Added By |
JGI automated process
on 2014-03-27 |
| Last Modified By |
JGI automated process
on 2014-08-18 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Environmental |
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Sequencing Center
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INDEAR Instituto de Agrobiotecnologia Rosario
(Argentina)
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Collaborating Institute
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Funding Agency
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Project Description
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Acidianus copahuensis ALE1, an archaea from the Crenarchaeota phylum, was isolated from hot springs in Copahue, and until now not reported anywhere else. A copahuensis is a facultative chemolithoautotrophic, thermoacidophilic organism (optimal growth temperature 75°C, pH 2.5). It is capable of autotrophic growth; aerobically using iron and different sulfur compounds as energy sources, and anaerobically using H2 and S as electron donors and Fe(III) or S as final electron acceptors. It can also grow heterotrophically using yeast extract or glucose. The genome sequence of A. copahuensis ALE1 strain was obtained using a whole-genome shotgun (WGS) strategy with a 454-FLX Titanium pyrosequencer at INDEAR, Argentina. Assembly was done using celera assembler version 7.0 with 52X genome coverage that generated a total of 68 contigs. The draft genome is 2,454,023 bases in length. The G+C content of the genomic DNA is 35.63 mol%.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
| JGI Data Utilization Status |
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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Genome announcements
Draft Genome Sequence of the Novel Thermoacidophilic Archaeon Acidianus copahuensis Strain ALE1, Isolated from the Copahue Volcanic Area in Neuquen, Argentina.
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Candidatus Acidianus copahuensis ALE1 |
| Organism |
Candidatus Acidianus copahuensis ALE1 |
| Analysis Projects |
Candidatus Acidianus copahuensis ALE1 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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454 |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
36
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0091268 |
| Organism Name |
Candidatus Acidianus copahuensis ALE1
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
ARCHAEAL
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| Phylogeny |
CRENARCHAEOTA-THERMOPROTEI
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| Genus |
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| Genus Synonyms |
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| Species |
Candidatus Acidianus copahuensis ALE1
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| Subspecies |
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| Species Synonyms |
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| Strain |
ALE1
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
10.1601/ex.32005
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| Exemplar Name |
Acidianus copahuensis
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| Taxon DOI |
10.1601/tx.32005
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1160895 |
| NCBI Superkingdom |
Archaea
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| NCBI Kingdom |
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| NCBI Phylum |
Crenarchaeota
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| NCBI Class |
Thermoprotei
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| NCBI Order |
Sulfolobales
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| NCBI Family |
Sulfolobaceae
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| NCBI Genus |
Acidianus
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| NCBI Species |
Candidatus Acidianus copahuensis
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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