Studies
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56,335 |
|
Biosamples
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196,965 |
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Sequencing Projects
|
525,335 |
|
Analysis Projects
|
385,117 |
| Organisms | 484,217 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0088892
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Project Name
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Nannocystis exedens ATCC 25963
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Other Names
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Legacy ER Project ID
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71273
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Legacy GOLD ID
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Gi0071273
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| NCBI BioProject Name | Nannocystis exedens ATCC 25963 | ||||||||||||||||||
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NCBI BioProject Accession
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PRJNA245574 |
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NCBI Locus Tag
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EI54
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NCBI BioSample Accession
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SAMN02745121 |
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Source Sample ID
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| PI | Markus Göker | ||||||||||||||||||
| Added By | JGI automated process on 2014-03-04 | ||||||||||||||||||
| Last Modified By | JGI automated process on 2022-09-05 | ||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II: from individual species to whole genera
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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Restricted
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JGI Award DOI
|
10.46936/10.25585/60001024 |
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| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera |
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| Organism |
Nannocystis exedens ATCC 25963 |
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| Analysis Projects |
Nannocystis exedens ATCC 25963 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
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Finishing Goal
|
Level 1: Standard Draft |
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0088892 |
| Organism Name |
Nannocystis exedens ATCC 25963
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-DELTA
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| Genus |
Nannocystis
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| Genus Synonyms |
|
| Species |
Nannocystis exedens
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| Subspecies |
|
| Species Synonyms |
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| Strain |
ATCC 25963
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
ATCC 25963
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.3766
|
| Exemplar Name |
Nannocystis exedens ATCC 25963
|
| Taxon DOI |
10.1601/tx.10889
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
54 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Myxococcota
|
| NCBI Class |
|
| NCBI Order |
Nannocystales
|
| NCBI Family |
Nannocystaceae
|
| NCBI Genus |
Nannocystis
|
| NCBI Species |
Nannocystis exedens
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Soil |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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