PROJECT INFORMATION
GOLD Project ID
Gp0088886  
Project Name
Lampropedia hyalina DSM 16112  
Other Names
  
Legacy ER Project ID
71267  
Legacy GOLD ID
Gi0071267  
NCBI BioProject Name Lampropedia hyalina DSM 16112
NCBI BioProject ID 245723
NCBI BioProject Accession PRJNA245723
NCBI Locus Tag
EK00  
NCBI BioSample Accession SAMN02745117
PI Nikos Kyrpides
Added By JGI automated process on 2014-03-04
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-KMG
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2066000  (Link to NCBI )
Experiment Title Lampropedia hyalina DSM 16112
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name XYTU
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project
Organism Lampropedia hyalina DSM 16112
Analysis Projects Lampropedia hyalina DSM 16112
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0088886
Organism Name
Lampropedia hyalina DSM 16112  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Lampropedia  
Genus Synonyms
  
Species
Lampropedia hyalina  
Subspecies
  
Species Synonyms
  
Strain
DSM 16112  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 16112  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1816  
Exemplar Name
Lampropedia hyalina  
Taxon DOI
10.1601/tx.1816  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1122156
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Lampropedia  
NCBI Species
Lampropedia hyalina  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 376906
Genbank 16S ID AY291120
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
6  
Cell Diameter
1.0-1.5 um  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Tetrads
Pairs
Diseases
  
Known Habitats Aquatic
Metabolisms
  
Phenotypes Catalase positive
Energy Sources Chemoorganotroph

 

 

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