PROJECT INFORMATION
GOLD Project ID
Gp0088045  
Project Name
Lachnoclostridium clostidiforme ATCC 25537  
Other Names
  
Legacy ER Project ID
70911  
Legacy GOLD ID
Gi0070911  
NCBI BioProject Name
  
NCBI BioProject ID 254881
NCBI BioProject Accession PRJNA254881
NCBI Locus Tag
IE41  
NCBI BioSample Accession SAMN05660211
PI William Kelly
Added By JGI automated process on 2014-02-20
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Nature biotechnology 36(4):359-367 Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2330822  (Link to NCBI )
Experiment Title Clostridium clostidiforme ATCC 25537
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name USTW
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.
Organism Lachnoclostridium clostidiforme ATCC 25537
Analysis Projects Lachnoclostridium clostidiforme ATCC 25537
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0088045
Organism Name
Lachnoclostridium clostidiforme ATCC 25537  
Other names (alias, synonyms, short names, common names)
Clostridium clostidiforme ATCC 25537  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lachnoclostridium  
Genus Synonyms
Clostridium  
Species
Lachnoclostridium clostridioforme  
Subspecies
  
Species Synonyms
  
Strain
ATCC 25537  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 25537  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3916  
Exemplar Name
Enterocloster clostridioformis  
Taxon DOI
10.1601/tx.36002  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1531
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Lachnospiraceae  
NCBI Genus
Enterocloster  
NCBI Species
Enterocloster clostridioformis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M59089
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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