PROJECT INFORMATION
GOLD Project ID
Gp0087955  
Project Name
Ferriphaselus sp. R-1  
Other Names
  
Legacy ER Project ID
70821  
Legacy GOLD ID
Gi0070821  
NCBI BioProject Name Ferriphaselus sp. R-1
NCBI BioProject ID 243963
NCBI BioProject Accession PRJNA243963
NCBI Locus Tag
DM08  
NCBI BioSample Accession SAMN02745141
PI Clara Chan
Added By JGI automated process on 2014-02-20
Last Modified By JGI automated process on 2020-05-17
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing a neutrophilic Fe-oxidizing, biomineral stalk-forming Gallionellales strain R-1  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Frontiers in microbiology Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2052699  (Link to NCBI )
Experiment Title Ferriphaselus sp. R-1
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SXPP
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Sequencing a neutrophilic Fe-oxidizing, biomineral stalk-forming Gallionellales strain R-1
Organism Ferriphaselus sp. R-1
Analysis Projects Ferriphaselus sp. R-1
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina MiSeq
PacBio RS II
Library Method (MIGS-28)
PacBio 6-10kb w/ Blue Pippin Size Selection, Tubes; Illumina Regular Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0087955
Organism Name
Ferriphaselus sp. R-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Ferriphaselus  
Genus Synonyms
  
Species
Ferriphaselus sp. R-1  
Subspecies
  
Species Synonyms
  
Strain
R-1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1485544
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Nitrosomonadales  
NCBI Family
Gallionellaceae  
NCBI Genus
Ferriphaselus  
NCBI Species
Ferriphaselus sp. R-1  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
Spring  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Bean-shaped  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
5.6  
Cell Diameter
  
Cell Length
1.8–2.1 µm  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Groundwater
Metabolisms Iron oxidizer
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

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