Studies
|
41,233 |
|
Biosamples
|
90,483 |
|
Sequencing Projects
|
328,347 |
|
Analysis Projects
|
269,124 |
| Organisms | 372,912 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0086807
|
|
Project Name
|
Gemmatimonadetes bacterium KBS708
|
|
Other Names
|
|
|
Legacy ER Project ID
|
69848
|
|
Legacy GOLD ID
|
Gi0069848, Gc0069848
|
| NCBI BioProject Name | Gemmatimonadetes bacterium KBS708 |
|
NCBI BioProject ID
|
194094 |
|
NCBI BioProject Accession
|
PRJNA194094 |
|
NCBI Locus Tag
|
J421
|
|
NCBI BioSample Accession
|
SAMN02641636 |
| PI | |
| Added By |
JGI automated process
on 2014-02-14 |
| Last Modified By |
Alejandro Rodriguez Mojica
on 2018-07-17 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Environmental |
|
Sequencing Center
|
University of Tennessee
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
A bacterial strain KBS708 was isolated from organically-managed agricultural soil in Michigan, USA. 16S rRNA gene sequencing identified it as belonging to the phylum Gemmatimonadetes, a phylum that is widespread in the environment, particularly in soils and sediments, but is rarely cultivated. To date, only one other cultivated isolate has been characterized from this phylum: Gemmatimonas aurantiaca strain T-27 (Zhang et al., 2003); KBS708 has only 89% 16S rRNA gene sequence identity to G. aurantiaca strain T-27, indicating that KBS708 represents a novel genus and species within the phylum Gemmatimonadetes.
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
Genome announcements
Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum.
|
|
Other Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Gemmatimonadetes bacterium KBS708 |
| Organism |
Gemmatimonadetes bacterium KBS708 |
| Analysis Projects |
Gemmatimonadetes bacterium KBS708 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
73
|
| Chromosome Count |
2
|
| Plasmid Count |
2
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0086807 |
| Organism Name |
Gemmatimonadetes bacterium KBS708
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
GEMMATIMONADETES
|
| Genus |
|
| Genus Synonyms |
|
| Species |
Gemmatimonadetes bacterium KBS708
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
KBS708
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
861299 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Gemmatimonadetes
|
| NCBI Class |
Gemmatimonadetes
|
| NCBI Order |
Gemmatimonadales
|
| NCBI Family |
Gemmatimonadaceae
|
| NCBI Genus |
Gemmatirosa
|
| NCBI Species |
Gemmatirosa kalamazoonesis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
|
| Ecosystem Category |
|
| Ecosystem Type |
|
| Ecosystem Subtype |
|
| Specific Ecosystem |
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
