PROJECT INFORMATION
GOLD Project ID
Gp0086807  
Project Name
Gemmatimonadetes bacterium KBS708  
Other Names
  
Legacy ER Project ID
69848  
Legacy GOLD ID
Gi0069848, Gc0069848  
NCBI BioProject Name Gemmatimonadetes bacterium KBS708
NCBI BioProject ID 194094
NCBI BioProject Accession PRJNA194094
NCBI Locus Tag
J421  
NCBI BioSample Accession SAMN02641636
PI
Added By JGI automated process on 2014-02-14
Last Modified By Alejandro Rodriguez Mojica on 2018-07-17
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center University of Tennessee (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
A bacterial strain KBS708 was isolated from organically-managed agricultural soil in Michigan, USA. 16S rRNA gene sequencing identified it as belonging to the phylum Gemmatimonadetes, a phylum that is widespread in the environment, particularly in soils and sediments, but is rarely cultivated. To date, only one other cultivated isolate has been characterized from this phylum: Gemmatimonas aurantiaca strain T-27 (Zhang et al., 2003); KBS708 has only 89% 16S rRNA gene sequence identity to G. aurantiaca strain T-27, indicating that KBS708 represents a novel genus and species within the phylum Gemmatimonadetes.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Gemmatimonadetes bacterium KBS708
Organism Gemmatimonadetes bacterium KBS708
Analysis Projects Gemmatimonadetes bacterium KBS708
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
73  
Chromosome Count
2  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0086807
Organism Name
Gemmatimonadetes bacterium KBS708  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
GEMMATIMONADETES  
Genus
  
Genus Synonyms
  
Species
Gemmatimonadetes bacterium KBS708  
Subspecies
  
Species Synonyms
  
Strain
KBS708  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 861299
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Gemmatimonadetes  
NCBI Class
Gemmatimonadetes  
NCBI Order
Gemmatimonadales  
NCBI Family
Gemmatimonadaceae  
NCBI Genus
Gemmatirosa  
NCBI Species
Gemmatirosa kalamazoonesis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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