PROJECT INFORMATION | |
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GOLD Project ID
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Gp0086807
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Project Name
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Gemmatirosa kalamazoonensis KBS708
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Other Names
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Legacy ER Project ID
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69848
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Legacy GOLD ID
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Gi0069848, Gc0069848
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NCBI BioProject Name | Gemmatirosa kalamazoonensis KBS708 |
NCBI BioProject Accession
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PRJNA194094 |
NCBI Locus Tag
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J421
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NCBI BioSample Accession
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SAMN02641636 |
Source Sample ID
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PI | Unknown |
Added By | JGI automated process on 2014-02-14 |
Last Modified By | Mahathi Kandimalla on 2022-11-08 |
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Environmental |
Sequencing Center
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University of Tennessee
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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A bacterial strain KBS708 was isolated from organically-managed agricultural soil in Michigan, USA. 16S rRNA gene sequencing identified it as belonging to the phylum Gemmatimonadetes, a phylum that is widespread in the environment, particularly in soils and sediments, but is rarely cultivated. To date, only one other cultivated isolate has been characterized from this phylum: Gemmatimonas aurantiaca strain T-27 (Zhang et al., 2003); KBS708 has only 89% 16S rRNA gene sequence identity to G. aurantiaca strain T-27, indicating that KBS708 represents a novel genus and species within the phylum Gemmatimonadetes.
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Genome announcements: Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum. PubMed: 24699952 DOI: 10.1128/genomeA.00226-14 |
Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Gemmatirosa kalamazoonensis KBS708 |
Organism |
Gemmatirosa kalamazoonensis KBS708 |
Analysis Projects |
Gemmatirosa kalamazoonensis KBS708 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
73
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Chromosome Count |
2
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Plasmid Count |
2
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ORGANISM NAME | |
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GOLD Organism ID |
Go0086807 |
Organism Name |
Gemmatirosa kalamazoonensis KBS708
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
GEMMATIMONADETES
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Genus |
Gemmatirosa
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Genus Synonyms |
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Species |
Gemmatirosa kalamazoonensis
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Subspecies |
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Species Synonyms |
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Strain |
KBS708
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
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Type Strain |
Unknown
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Exemplar DOI |
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Exemplar Name |
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Taxon DOI |
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
861299 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Gemmatimonadetes
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NCBI Class |
Gemmatimonadetes
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NCBI Order |
Gemmatimonadales
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NCBI Family |
Gemmatimonadaceae
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NCBI Genus |
Gemmatirosa
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NCBI Species |
Gemmatirosa kalamazoonensis
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ISOLATION CLASSIFICATION | |
Ecosystem |
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Ecosystem Category |
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Ecosystem Type |
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Ecosystem Subtype |
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Specific Ecosystem |
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
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Metabolisms |
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Phenotypes |
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Energy Sources |
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CYANOBACTERIA METADATA | |
Filaments |
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Filament Type |
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Differentiated Cells |
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Position Of Heterocysts |
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Cysts |
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Mode Of Reproduction |
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Trichome |
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Trichome Type |
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Carotenoids |
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Pigments |
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Phage Infectivity |
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Phage Type |
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Restriction Enzyme |
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Toxin Production |
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Toxin Type |
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Secondary Metabolites |
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Developmental Cycle |
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Branching |
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Gas Vesicles |
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Gas Vesicle Type |
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Diagnostic Inclusion Body Information |
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Extracellular Structures |
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Bloom Forming |
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Pigment Type |
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Complementary chromatic adaptation (CCA) |
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Medium Types |
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