Studies
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56,011 |
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Biosamples
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183,990 |
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Sequencing Projects
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508,073 |
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Analysis Projects
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381,503 |
| Organisms | 480,513 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0086807
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Project Name
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Gemmatirosa kalamazoonensis KBS708
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Other Names
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Legacy ER Project ID
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69848
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Legacy GOLD ID
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Gi0069848, Gc0069848
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| NCBI BioProject Name | Gemmatirosa kalamazoonensis KBS708 |
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NCBI BioProject Accession
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PRJNA194094 |
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NCBI Locus Tag
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J421
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NCBI BioSample Accession
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SAMN02641636 |
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Source Sample ID
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| PI | Unknown |
| Added By | JGI automated process on 2014-02-14 |
| Last Modified By | Mahathi Kandimalla on 2022-11-08 |
| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Environmental |
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Sequencing Center
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University of Tennessee
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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A bacterial strain KBS708 was isolated from organically-managed agricultural soil in Michigan, USA. 16S rRNA gene sequencing identified it as belonging to the phylum Gemmatimonadetes, a phylum that is widespread in the environment, particularly in soils and sediments, but is rarely cultivated. To date, only one other cultivated isolate has been characterized from this phylum: Gemmatimonas aurantiaca strain T-27 (Zhang et al., 2003); KBS708 has only 89% 16S rRNA gene sequence identity to G. aurantiaca strain T-27, indicating that KBS708 represents a novel genus and species within the phylum Gemmatimonadetes.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Genome announcements: Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum. PubMed: 24699952 DOI: 10.1128/genomeA.00226-14 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Gemmatirosa kalamazoonensis KBS708 |
| Organism |
Gemmatirosa kalamazoonensis KBS708 |
| Analysis Projects |
Gemmatirosa kalamazoonensis KBS708 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
73
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| Chromosome Count |
2
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| Plasmid Count |
2
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0086807 |
| Organism Name |
Gemmatirosa kalamazoonensis KBS708
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
GEMMATIMONADETES
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| Genus |
Gemmatirosa
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| Genus Synonyms |
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| Species |
Gemmatirosa kalamazoonensis
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| Subspecies |
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| Species Synonyms |
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| Strain |
KBS708
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
861299 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Gemmatimonadetes
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| NCBI Class |
Gemmatimonadetes
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| NCBI Order |
Gemmatimonadales
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| NCBI Family |
Gemmatimonadaceae
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| NCBI Genus |
Gemmatirosa
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| NCBI Species |
Gemmatirosa kalamazoonensis
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| CYANOBACTERIA METADATA | |
| Filaments |
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| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
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| Complementary chromatic adaptation (CCA) |
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| Medium Types |
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