Studies
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56,334 |
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Biosamples
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196,988 |
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Sequencing Projects
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525,360 |
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Analysis Projects
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384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0086706
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Project Name
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Candidatus Magnetobacterium casensis MYR-1
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Other Names
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Legacy ER Project ID
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69747
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Legacy GOLD ID
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Gi0069747
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| NCBI BioProject Name | Candidatus Magnetobacterium casensis strain:MYR-1 |
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NCBI BioProject Accession
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PRJNA236065 |
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NCBI Locus Tag
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Mcas
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NCBI BioSample Accession
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SAMN02726339 |
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Source Sample ID
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| PI | Unknown |
| Added By | JGI automated process on 2014-02-14 |
| Last Modified By | Galina Ovchinnikova on 2017-03-29 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Environmental |
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Sequencing Center
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Chinese Academy of Sciences
(China)
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Collaborating Institute
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Funding Agency
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Project Description
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Magnetotactic bacteria (MTB) in the phylum Nitrospirae able to form hundreds of intracellular bullet-shaped magnetite magnetosomes per cell are widespread in aquatic environments and play important roles in global iron cycling. Analyses of the genome sequence of "Candidatus Magnetobacterium casensis" provide important novel insights into the physiology and magnetosome biosynthesis of MTB belonging to the poorly understood Nitrospirae phylum. The genomic information presented here may also help guide cultivation efforts and provide essential knowledge to elucidate the function and ecology for this organism.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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The ISME journal: 8(12):2463-77 Genomic insights into the uncultured genus 'Candidatus Magnetobacterium' in the phylum Nitrospirae. PubMed: 24914800 DOI: 10.1038/ismej.2014.94 |
| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Candidatus Magnetobacterium casensis MYR-1 |
| Organism |
Candidatus Magnetobacterium casensis MYR-1 |
| Analysis Projects |
Candidatus Magnetobacterium casensis MYR-1 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
49
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0086706 |
| Organism Name |
Candidatus Magnetobacterium casensis MYR-1
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
NITROSPIROTA
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| Genus |
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| Genus Synonyms |
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| Species |
Candidatus Magnetobacterium casensis MYR-1
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| Subspecies |
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| Species Synonyms |
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| Strain |
MYR-1
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Unknown
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1455061 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Nitrospirota
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| NCBI Class |
Nitrospiria
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| NCBI Order |
Nitrospirales
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| NCBI Family |
Nitrospiraceae
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| NCBI Genus |
Candidatus Magnetobacterium
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| NCBI Species |
Candidatus Magnetobacterium casensis
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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